PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00213.2 | ||||||||
Common Name | AMTR_s00213p00014190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | NF-YC | ||||||||
Protein Properties | Length: 190aa MW: 21929.4 Da PI: 5.6346 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 143.4 | 5.3e-45 | 6 | 96 | 11 | 101 |
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81 ++ ++f++h+lPlarikki+k+d+dvkmisae+P+l++kacelfileltlr+wlh+ee+krrtl++sdia evm_27.model.AmTr_v1.0_scaffold00213.2 6 QHIHEFRQHQLPLARIKKIMKSDDDVKMISAETPILFAKACELFILELTLRAWLHTEECKRRTLQRSDIAG 76 67889****************************************************************** PP NF-YC 82 avtrtdifdflvdivprdel 101 a+ ++ dflvd+vp +e evm_27.model.AmTr_v1.0_scaffold00213.2 77 AIRAGEVLDFLVDVVPMEEF 96 ****************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.02E-27 | 7 | 96 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.8E-35 | 9 | 79 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-19 | 15 | 78 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MVKGTQHIHE FRQHQLPLAR IKKIMKSDDD VKMISAETPI LFAKACELFI LELTLRAWLH 60 TEECKRRTLQ RSDIAGAIRA GEVLDFLVDV VPMEEFRGVQ PFLCMQDDQF GVNWSGNESL 120 PYSGMQFPKM NPRPFNQILP EDVTSRQHEI PQQMMLQQPF FSNSVMYDPP QVDNKRVEWL 180 IVQGIEALT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-39 | 3 | 92 | 5 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 71 | RRTLQRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020520742.1 | 1e-118 | nuclear transcription factor Y subunit C-6 | ||||
Refseq | XP_020520743.1 | 1e-118 | nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | W1P484 | 1e-139 | W1P484_AMBTC; Uncharacterized protein | ||||
STRING | ERN02469 | 1e-139 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP315 | 17 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 2e-44 | nuclear factor Y, subunit C4 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00213.2 |
Publications ? help Back to Top | |||
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