PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm_27.model.AmTr_v1.0_scaffold00210.6 | ||||||||
Common Name | AMTR_s00210p00022930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 104aa MW: 11662.7 Da PI: 4.6782 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 35.6 | 2.8e-11 | 30 | 75 | 2 | 49 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 p+G+rF P+deel+ +yL+ + g +l++ ++i e d+y+++Pw+Lp evm_27.model.AmTr_v1.0_scaffold00210.6 30 PMGVRFCPSDEELM-YYLAWRHLGVPLPT-NFILEEDLYHLDPWELPD 75 89************.*************9.89**************93 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-14 | 24 | 77 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 12.251 | 29 | 103 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 104 aa Download sequence Send to blast |
MASNGTANGA GIPRPPPGPP QPFMLHVRFP MGVRFCPSDE ELMYYLAWRH LGVPLPTNFI 60 LEEDLYHLDP WELPDMPASF CNVEGRLLLI LLLLVVMKDI FQS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006830665.2 | 3e-15 | NAC transcription factor 56 | ||||
TrEMBL | W1NT25 | 5e-69 | W1NT25_AMBTC; Uncharacterized protein | ||||
STRING | ERM98080 | 8e-70 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61110.1 | 2e-11 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm_27.model.AmTr_v1.0_scaffold00210.6 |
Publications ? help Back to Top | |||
---|---|---|---|
|