PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00186.1
Common NameAMTR_s00186p00015620, LOC18432891
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 295aa    MW: 33703.4 Da    PI: 9.3715
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00186.1genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.2e-181560147
                                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                            rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ 
  evm_27.model.AmTr_v1.0_scaffold00186.1 15 RGHWRPGEDEKLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 60
                                            899*****************************.***********996 PP
2Myb_DNA-binding60.63.3e-1967110146
                                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                             r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  evm_27.model.AmTr_v1.0_scaffold00186.1  67 RRPFTPEEEERLLSAHRHHGNK-WALIARLFP-GRTDNAVKNHWHV 110
                                             679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1681061IPR017930Myb domain
SuperFamilySSF466894.49E-3013108IPR009057Homeodomain-like
SMARTSM007172.5E-141463IPR001005SANT/Myb domain
PfamPF002493.8E-171560IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-271668IPR009057Homeodomain-like
CDDcd001671.34E-131859No hitNo description
PROSITE profilePS5129427.99362116IPR017930Myb domain
SMARTSM007178.3E-1666114IPR001005SANT/Myb domain
PfamPF002491.8E-1667109IPR001005SANT/Myb domain
CDDcd001671.78E-1269109No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2269115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MENSGSVDDQ KSSPRGHWRP GEDEKLRQLV EQYGPQNWNS IAEKLQGRSG KSCRLRWFNQ  60
LDPRINRRPF TPEEEERLLS AHRHHGNKWA LIARLFPGRT DNAVKNHWHV IMARKHRERS  120
RIVNKRRCNH LITHSDNSSN NTTTSQPYYR ISTVFDPCNM TLSGLGIRDQ FSNVRYALPS  180
STRATVGLLS PSFSTIGRPF PCTWGGFAAP SDQREFYSYD SEFYGNSSRR EPCSYNFSGL  240
SCRSGHEIQN PQGQLTYMFF GNESKEDDQE EVGSEAMKKK NTGFIDFLGV GLSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-31151154104MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-301511558158MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-301511558158MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-31151154104C-Myb DNA-Binding Domain
1msf_C7e-31151154104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843047.10.0transcription factor MYB46 isoform X1
TrEMBLW1P4D50.0W1P4D5_AMBTC; Uncharacterized protein
STRINGERN047220.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-65myb domain protein 105
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]