PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00170.29 | ||||||||
Common Name | AMTR_s00170p00061300, LOC18426356 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | BES1 | ||||||||
Protein Properties | Length: 294aa MW: 31399 Da PI: 8.3862 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 207.9 | 2.7e-64 | 2 | 136 | 1 | 147 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr 70 ++++r ptwkErEnnkrRERrRRaiaakiyaGLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyr evm_27.model.AmTr_v1.0_scaffold00170.29 2 TSGTRLPTWKERENNKRRERRRRAIAAKIYAGLRMYGNYKLPKHCDNNEVLKALCAEAGWTVEEDGTTYR 71 5899****************************************************************** PP DUF822 71 kgskpleeaeaagssasaspesslqsslkssalaspvesysaspksssfpspssldsislasaasllpvl 140 kg+kp e+++++g sasasp+ss++ +sp +sy++sp+sssfpsp+s+ ++ +sl+p+l evm_27.model.AmTr_v1.0_scaffold00170.29 72 KGCKPVERMDIVGGSASASPCSSYH--------PSPGPSYNPSPASSSFPSPASSY----TDGSSLIPWL 129 *************************........*******************9944....3456899999 PP DUF822 141 svlslvs 147 ++l++ s evm_27.model.AmTr_v1.0_scaffold00170.29 130 KNLPSPS 136 9987644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 9.5E-63 | 3 | 132 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MTSGTRLPTW KERENNKRRE RRRRAIAAKI YAGLRMYGNY KLPKHCDNNE VLKALCAEAG 60 WTVEEDGTTY RKGCKPVERM DIVGGSASAS PCSSYHPSPG PSYNPSPASS SFPSPASSYT 120 DGSSLIPWLK NLPSPSSHKL PSLYIHGGSI SAPVTPPLSS PTSRGPRVKS DWDFTKNGEN 180 SVSFFPNSTP PSPGRQVASD WLSGIRLPAG GPMSPTFSLV SPASSNPFGG LWAPAGSGTC 240 SPCNVESGDV RMVEASDEFA FGVVKPWQGE KIHDECGSDD LELTLGSSRT RCD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 1e-24 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 1e-24 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 1e-24 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 1e-24 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00248 | DAP | Transfer from AT1G78700 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006833072.1 | 0.0 | BES1/BZR1 homolog protein 4 | ||||
Swissprot | Q9ZV88 | 1e-104 | BEH4_ARATH; BES1/BZR1 homolog protein 4 | ||||
TrEMBL | W1NTC8 | 0.0 | W1NTC8_AMBTC; Uncharacterized protein | ||||
STRING | ERM98350 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1595 | 15 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78700.1 | 3e-81 | BES1/BZR1 homolog 4 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00170.29 |
Entrez Gene | 18426356 |
Publications ? help Back to Top | |||
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