PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00169.34
Common NameAMTR_s00169p00055880
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Dof
Protein Properties Length: 318aa    MW: 34370.4 Da    PI: 8.5586
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00169.34genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.22.1e-393187561
                                   zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                                              lkcprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk k++
  evm_27.model.AmTr_v1.0_scaffold00169.34 31 PLKCPRCDSMNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKTKTT 87
                                             689**************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-241982IPR003851Zinc finger, Dof-type
PfamPF027014.3E-333186IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3943286IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103470IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MIQGLLGGAT DRCGKPNPSS QEKGSAADHP PLKCPRCDSM NTKFCYYNNY NLTQPRHFCK  60
TCRRYWTKGG ALRNVPIGGG CRKTKTTTTT NTNTNTTTTP TTKFTKPRPL SSEPSDVVKQ  120
NLDHPHFDHE PIWLPQISHP LLDLHVPTTS SPSGGLGLDW AFLRPNPNPS PSPNGFVVKE  180
ESPMIIGSGP SAFALNTHTL DPIINQTNLN LSPYWRTNSA NNGTTTSLNV TSTSCSTTTP  240
STSSNGQHVF MGGSESQIVK QEMYNKLRAS MNYYTDQQQV ALGLGGSPME MGGGDIGYWN  300
SALSWSDLPA TTNGAFP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM0843632e-32AM084363.1 Hordeum vulgare subsp. vulgare partial dof15 gene for dof zinc finger protein 15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848559.20.0dof zinc finger protein PBF
TrEMBLW1PSB20.0W1PSB2_AMBTC; Uncharacterized protein
STRINGERN101400.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07640.13e-32Dof family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]