PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00162.31
Common NameAMTR_s00162p00072300
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family FAR1
Protein Properties Length: 396aa    MW: 44635.6 Da    PI: 7.7851
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00162.31genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1767.6e-2493176290
                                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 
                                              fYneYA ++GF +r+s ++++  nge ++r fvCskeg+re+++     ++++r++tr gCka +  kk 
  evm_27.model.AmTr_v1.0_scaffold00162.31  93 FYNEYALQMGFGIRNSVNRRK--NGENISRYFVCSKEGHRERKHLM---SEQPRPHTREGCKALIYAKKV 157
                                              ****************99998..9999**************99877...999****************** PP

                                     FAR1  72 kdgkwevtkleleHnHela 90 
                                              ++g+w + k++++H+H+++
  evm_27.model.AmTr_v1.0_scaffold00162.31 158 ESGQWIIRKFVKDHSHPMV 176
                                              ****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.4E-2193176IPR004330FAR1 DNA binding domain
Gene3DG3DSA:4.10.60.101.6E-6113136IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.101.6E-6329348IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MESNVSVSGE ISNGNMCDST DLEAVEDFEG NEHISPNNEN MNTGENNKNK QESTDKKGVD  60
ISAGKAIINC EVRRNIEPFE GMVFESEEAV RTFYNEYALQ MGFGIRNSVN RRKNGENISR  120
YFVCSKEGHR ERKHLMSEQP RPHTREGCKA LIYAKKVESG QWIIRKFVKD HSHPMVSPNN  180
VVLLRSHRRA ANREKNFIST FDKEQSIHVE EKSRELNVQV RDNNSSREPL TLRYNDLREH  240
ALKVAAEGAT TAGSYRIAMR GIQKVLHEVI MAKVKMITHI GGVQGGNTSD ESQPASTLEN  300
VNFDDPQQTM TRDCTPTTRL NLGWENSSKR RKTCVNCKKQ GHDKRTCSYS DSRGTTSDNV  360
TCVPTSAVPE NEFVHSTQVS IDGQQRFELG GYAER*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006847780.20.0protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2
RefseqXP_011624605.10.0protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2
TrEMBLW1PNR20.0W1PNR2_AMBTC; Uncharacterized protein
STRINGERN093610.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.14e-28FAR1 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]