PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00161.13
Common NameAMTR_s00161p00047190, LOC18438653
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family E2F/DP
Protein Properties Length: 362aa    MW: 39849.7 Da    PI: 7.475
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00161.13genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.39.5e-27101183271
                                  E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLe 54 
                                              ++++Lr+++ k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+
  evm_27.model.AmTr_v1.0_scaffold00161.13 101 TGRGLRQFSLK---VCEKVESkGRTTYNEVADELVAEfanpsanlgtpdqqqyDEKNIRRRVYDALNVLM 167
                                              689********...*****999************************************************ PP

                                  E2F_TDP  55 alnliekkekneirwkg 71 
                                              a+++i+k +k+ei+wkg
  evm_27.model.AmTr_v1.0_scaffold00161.13 168 AMDIISK-DKKEIQWKG 183
                                              *******.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094045.8E-1243357IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.103.6E-4597188IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-33100183IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.22E-20103184IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023199.8E-25103183IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144583.44E-41188291IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.97E-40189300No hitNo description
SMARTSM011381.4E-63190355IPR014889Transcription factor DP, C-terminal
PfamPF087813.0E-39191308IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MATCGNNSLD EDNMGKVPVT YPRGSRSWGS ISGGHGQSLS TSGSVGSPSN RSEPATTTAA  60
TESTFVRLNH LDFHDDDAGS PVPSGGKKKK RGMRPVGADK TGRGLRQFSL KVCEKVESKG  120
RTTYNEVADE LVAEFANPSA NLGTPDQQQY DEKNIRRRVY DALNVLMAMD IISKDKKEIQ  180
WKGLPRTSLN DMEELKQERI AIRSRIERKA SYLQELDEQI VGLQNLVRRN EQLYSSGSTP  240
SGGVALPFIL VQTRPHATVE VEISEDMQLV HLDFNSTPFE LHDDTYVLKA MRFCETQHGD  300
AAQEATRVSN GGESSSMHHH GIYPHLMPQP SRPSASGRLI TLPPVPGILK GRVKHEHHMQ  360
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-3494188193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848900.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-145DPB_ARATH; Transcription factor-like protein DPB
TrEMBLW1PRZ40.0W1PRZ4_AMBTC; Uncharacterized protein
STRINGERN104810.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25111734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-130Transcription factor DP
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]