PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00160.24
Common NameAMTR_s00160p00070370
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family B3
Protein Properties Length: 495aa    MW: 54035.6 Da    PI: 5.229
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00160.24genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.4e-17244337293
                                              EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TT CS
                                       B3   2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkG 64 
                                              +k+l +sdv+++gr+vlpk+ ae+h        +e+++ +++d  s ++W ++++y  ++ks++yvl+ +
  evm_27.model.AmTr_v1.0_scaffold00160.24 244 QKELRNSDVSSLGRIVLPKRDAEAHlpylT--VKEGIQFKVTDlVSANEWHMRYRYwpNNKSRMYVLE-N 310
                                              7999***********************643..4477899999*7788*********89999999**99.* PP

                                              HHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                                       B3  65 WkeFvkangLkegDfvvFkldgrsefelv 93 
                                              + eFvk ++L+ gDfv+++ d++   e +
  evm_27.model.AmTr_v1.0_scaffold00160.24 311 TGEFVKVHDLRCGDFVILYQDEN--NETF 337
                                              *******************5544..3334 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-25237344IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-20242339IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.1E-17243344IPR003340B3 DNA binding domain
CDDcd100171.97E-24243338No hitNo description
PROSITE profilePS508639.192243344IPR003340B3 DNA binding domain
PfamPF023621.0E-13244335IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MEREEDVMGF QANQEAYMAT NSLQEEGNTF QIDPYSSSIS ASNNAGGGGG GFQSINQDFS  60
PTSHNVGGGG GGGFRSINQD FSPATTHQYN TYISPDSMHF PCFSPPPLDP CSSSSMPLYD  120
AFPYPDLALN QPHMSHGNSP MVIGRDYTGG LLSMAMADPI QGWAASITRA ARSKRRIARR  180
MSFASKFSNF GRSPSSSSSS SSSGVYWPSP SSSGGRTGRM ACVYLQGPNV LTQFENKRLK  240
FVLQKELRNS DVSSLGRIVL PKRDAEAHLP YLTVKEGIQF KVTDLVSANE WHMRYRYWPN  300
NKSRMYVLEN TGEFVKVHDL RCGDFVILYQ DENNETFIYP RKARPVTASS ESVRPHSIRP  360
QSPVARADGE ATRPGRGRGR ARARGSGEAS ATTATTTGEP KEVNDLGTGV VGGFFEEDDP  420
YGFGIEPTTL ILDDDYDFSS LERLPSFDEC DLSLYESLLD MFQDDPKGGD APGGVKEGTK  480
REDMAQDSSR EGAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-372393431106B3 domain-containing transcription factor FUS3
6j9b_D3e-372393431106B3 domain-containing transcription factor FUS3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375384RGRGRARARG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW1PTF80.0W1PTF8_AMBTC; Uncharacterized protein
STRINGERN109910.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.11e-36B3 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]