PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00159.19
Common NameAMTR_s00159p00052830
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family M-type_MADS
Protein Properties Length: 212aa    MW: 24405.3 Da    PI: 5.1988
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00159.19genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF511.8e-161968150
                                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                             k+ienk nrqvtfskRr+ ++ KA  L+v  da +a++ fs  g+ y ++
  evm_27.model.AmTr_v1.0_scaffold00159.19 19 KFIENKENRQVTFSKRRTRLFNKAADLCVHYDASIAILTFSRAGRPYAFA 68
                                             79******************************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.3011171IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-211170IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-221286IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-141333IPR002100Transcription factor, MADS-box
PfamPF003196.0E-192067IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-143348IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-144869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MVKKDAEKKR MGRQKIDIKF IENKENRQVT FSKRRTRLFN KAADLCVHYD ASIAILTFSR  60
AGRPYAFADR DIDSIIHRFV RTHSDQEPSN THYPNRPNPL MDDYFRLVKD LEEETTQSSA  120
LAHRKNMPNS GGSGFWWDAE VDSLGLDELN SWVEALERLR ENVAERVEEV QKGWSQGEVC  180
APSSSLLLVD SDTSNMAPLP EFLDFLEQYE F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006850539.31e-158agamous-like MADS-box protein AGL29
TrEMBLW1PXG61e-157W1PXG6_AMBTC; Uncharacterized protein
STRINGERN121201e-157(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.19e-22AGAMOUS-like 29
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]