PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00159.17 | ||||||||
Common Name | AMTR_s00159p00052170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 212aa MW: 23946.2 Da PI: 9.3318 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.7 | 3.4e-14 | 19 | 68 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k ienk n qvtfskRrng+ KA+ L++ ++ +a++ fs+ g+ y ++ evm_27.model.AmTr_v1.0_scaffold00159.17 19 KLIENKNNLQVTFSKRRNGLSRKAFDLCIKYGTSIAILAFSPAGRPYPFA 68 569*****************************************988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.2E-21 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.88 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-22 | 12 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-14 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-17 | 21 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-14 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-14 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MINKNAEKKR MGRKKIDIKL IENKNNLQVT FSKRRNGLSR KAFDLCIKYG TSIAILAFSP 60 AGRPYPFAHP DIDSIIHRFI RTHNNEEPSN VHYPHVHNPL MDEYSRLVKE LEEEKKLSLA 120 LAQRKKMPNS GGSGFWWDAE VGSLGSHELT SWVESVERLR ENVAKRVGEV QKGSNQVEVG 180 APSSSPPLVD SDTINLAPLP ESIDFLEHYQ F* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006850537.2 | 1e-149 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | W1PVK4 | 1e-155 | W1PVK4_AMBTC; Uncharacterized protein | ||||
STRING | ERN12118 | 1e-156 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-23 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00159.17 |
Publications ? help Back to Top | |||
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