PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00158.8
Common NameAMTR_s00158p00056990, LOC18439129
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 443aa    MW: 46403.2 Da    PI: 9.3494
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00158.8genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_158.41.5e-18300362163
                                             XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                  bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                             ++e+krerrkq+NRe+ArrsR RK++e e+L+ +v+eL aeN +Lk++l++l ++++kl++e+
  evm_27.model.AmTr_v1.0_scaffold00158.8 300 DRERKRERRKQSNRESARRSRMRKQKESEQLAIRVEELNAENIDLKSQLNHLLENSKKLQQEN 362
                                             5899*********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.0E-33195IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.8E-12296360No hitNo description
SMARTSM003388.0E-13300364IPR004827Basic-leucine zipper domain
PfamPF001707.1E-16301362IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.312302365IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-9304354No hitNo description
PROSITE patternPS000360307322IPR004827Basic-leucine zipper domain
CDDcd147024.16E-16310353No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MGNNDTGTTT SKSDKASSPV QEQSGPTYPD WATAFQAYYG PGVSLPPPYF GSTIPSGHTP  60
HPYMWGPQPL MPPYGTPAYA AIYSHGGVYA HPAVPLGSHA HGHGVASTGM AIEAMPAGPM  120
GLETQAKSSS SKDQGGLMKK LKGFQGVTGA SGNRNRNGNA NGNGNSGSLQ GGMVCGTSQS  180
GEDGIEGSSD GSDGNTAQEE TRIGRKRIGG NMEGKGKSGK VDIQGYAVHS GGEGTASCSR  240
PLEATAAGKP MANLSSSNMV EGMDFRKAKA SAGLASPFPG SGGAIVPGGR DGASSEIWDD  300
RERKRERRKQ SNRESARRSR MRKQKESEQL AIRVEELNAE NIDLKSQLNH LLENSKKLQQ  360
ENSMLMEKLK SARLEHAGDV VSDKSAESQV GRPSVGLENL LSRVNNSGTS SRNIGQRENE  420
SHETKLHQLL ESKARADAVA AG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302324RKRERRKQSNRESARRSRMRKQK
2316323RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020525962.10.0common plant regulatory factor 1 isoform X3
TrEMBLW1PSC60.0W1PSC6_AMBTC; Uncharacterized protein
STRINGERN109480.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP43461123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.22e-32G-box binding factor 3
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]