PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00156.14 | ||||||||
Common Name | AMTR_s00156p00038330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | WRKY | ||||||||
Protein Properties | Length: 427aa MW: 47626.3 Da PI: 4.8796 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.2 | 2.2e-30 | 231 | 290 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ evm_27.model.AmTr_v1.0_scaffold00156.14 231 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 290 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-32 | 216 | 292 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.55E-28 | 224 | 292 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.782 | 226 | 292 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-37 | 231 | 291 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-27 | 232 | 290 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MAGPGNGRSS TSLSDRDDRV GEIDLSLKLE EEEEERHEVE DGERGEFDES ENGGEEDQKQ 60 SISQRKQLSV LQIEMVRMKE ENRVLRMAVD QTFKDYQELQ MKFASIQQNR REDMTPKEEK 120 AQIMLPINTS PGGIIDRKSS IKYINTIESS DLKGGEELSL SLGIPSSEKE TQKREENERD 180 KDEEIEENFQ MNGWLLPNKL QQREITELVA PPMAPRKSRV SVRARCQAPT MNDGCQWRKY 240 GQKIAKGNPC PRAYYRCTVA PGCPVRKQVQ RCLEDMSILI TTYEGTHNHP LPVGATAMAS 300 TTAAAATFML LNSQAQPYPP QNNFLSQNPN SNRGAIPPSS SEGIVLDLTR PQPPHFDMGS 360 SPYLSSVHYQ GSMDQCLVDN VSAVASDPKF RVALAAALSS FMEQGSPVDR AGQPVFAEPT 420 RTQRLE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-23 | 218 | 294 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020524302.1 | 0.0 | probable WRKY transcription factor 9 | ||||
TrEMBL | W1PJV9 | 0.0 | W1PJV9_AMBTC; Uncharacterized protein | ||||
STRING | ERN08293 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 3e-53 | WRKY DNA-binding protein 9 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00156.14 |
Publications ? help Back to Top | |||
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