PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00155.58
Common NameAMTR_s00155p00085360
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GATA
Protein Properties Length: 492aa    MW: 56855.9 Da    PI: 6.523
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00155.58genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.31.8e-17400433134
                                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                              C +C t kTp+WR+gp+g+ktLCnaCG++y + +
  evm_27.model.AmTr_v1.0_scaffold00155.58 400 CMHCFTEKTPQWRKGPRGPKTLCNACGVRYMSGR 433
                                              99****************************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.411394429IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-15394444IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-15396456No hitNo description
Gene3DG3DSA:3.30.50.102.8E-14398430IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.85E-14399446No hitNo description
PROSITE patternPS003440400425IPR000679Zinc finger, GATA-type
PfamPF003204.3E-15400434IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MFNGQSDDIT NHKWLSCFIE DVYFRSSESL AKVQASTPLK QEQVTSSMLD KRVEIWRQSS  60
TPLEQVTSSM LDKKVEIWRQ SSTPLMQEVE KEQVTGSMLD KEVEKEQVTG SMLDKKVEKE  120
QVTGSMFDKE MKNWILPSTP LRQKQVRGSM LDKKVEIWSS DNEPTSVLDA KFSDDSPSHE  180
NTSSEMEIWR ADNEPTSVLN AKFSNDTTHE NTLRDMDLED NFSSMTDPIY SEPTHHKTLQ  240
VEDTNIITTC KFEKDFSEIP REKSLRLMSG IDSFSTVIDP NPNDIEPTSQ FIVKNSESPD  300
YKTLNLKSTD SNDAWDFNVP FPEIPDAKTL RSIAQDYRSS TMFDTPYPKR SRSRRKPRKF  360
WHLLVPNTSK KQRQFRDRLN KLSISQIMIS GESSRFVRRC MHCFTEKTPQ WRKGPRGPKT  420
LCNACGVRYM SGRLLPEYRP ADSPTFVPSQ HSNSHRKVIQ MRQRREIHQM TTTMANENDD  480
CCSLDLESDF L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1348353KRSRSR
2351357RSRRKPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020523911.10.0uncharacterized protein LOC110007401
TrEMBLW1PI850.0W1PI85_AMBTC; Uncharacterized protein
STRINGERN077030.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-36GATA transcription factor 9
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]