PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00155.47
Common NameAMTR_s00155p00073540
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family BES1
Protein Properties Length: 275aa    MW: 29087.6 Da    PI: 9.2709
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00155.47genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221228e-381584271
                                   DUF822  2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrk 71
                                             g+g++ ++kE+E++k+RER RR i++ki+ GLR+ G+y+lp raD+n+Vl+AL++eAGwvve+DGttyr 
  evm_27.model.AmTr_v1.0_scaffold00155.47 15 GKGKRSSEKEKEKTKLRERNRRSITTKIFNGLRKFGGYNLPPRADINDVLRALAAEAGWVVEPDGTTYRT 84
                                             7899*****************************************************************3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.0E-3615186IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MKECSSEEGQ GQGQGKGKRS SEKEKEKTKL RERNRRSITT KIFNGLRKFG GYNLPPRADI  60
NDVLRALAAE AGWVVEPDGT TYRTPGLGVS RTIPTTQPLT IEPITMHPNT VSAPLSHGFG  120
TCTLTGLALL DPIEPGDCST TTSPRHPSSG PTHHRSSCPT LSPHQQVVAA VSSLSSPFGS  180
PAASSEVSGH VLSAGISPRS SVLSGRNVMD DVAAFLMGSP TGAAAFYGGH QPAPYVVLPH  240
AHHPLHPHPH HPFLFQEARA SNHNTPIGSP QRHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A3e-113783391437Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B3e-113783391437Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C3e-113783391437Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D3e-113783391437Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020523933.10.0protein BZR1 homolog 1
TrEMBLW1PCR30.0W1PCR3_AMBTC; Uncharacterized protein
STRINGERN076920.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10087811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19350.62e-14BES1 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]