PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00155.39
Common NameAMTR_s00155p00067370
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ARF
Protein Properties Length: 339aa    MW: 37140.2 Da    PI: 8.019
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00155.39genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.2e-23108206398
                                              EE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHH CS
                                       B3   3 kvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWke 67 
                                              kvltpsd+++ g +++p+ +ae+      +++++  ++l+++d +g++W++++iyr++++r++lt+GW+ 
  evm_27.model.AmTr_v1.0_scaffold00155.39 108 KVLTPSDANNGGGFSVPNACAESVfprldKSVEKPAQDLSMRDVHGETWKFRHIYRGSPKRHLLTTGWSA 177
                                              89*******************999****9555556679******************************** PP

                                              HHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                       B3  68 FvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                              Fv+a+ L + D+vvF +   +++  +v ++r
  evm_27.model.AmTr_v1.0_scaffold00155.39 178 FVNAKMLASEDTVVFAR--GDDGVVCVALRR 206
                                              ****************3..367766777776 PP
2Auxin_resp45.33.8e-16227305183
                               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdld 70 
                                              aa+ ++++  FevvY+P    + F+v+++ v +al+ ++  G +++m +e+    +  + G v +  ++d
  evm_27.model.AmTr_v1.0_scaffold00155.39 227 AAELVASGDQFEVVYYPNR-GPAFCVEIHTVDRALNFPWVRGVKIRMTVEG---VKGFVNGSVLSALAAD 292
                                              6889999**********97.567**************************97...345559********** PP

                               Auxin_resp  71 pvrWpnSkWrsLk 83 
                                               vrWp+S+W +L+
  evm_27.model.AmTr_v1.0_scaffold00155.39 293 RVRWPDSPWELLE 305
                                              *********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.97E-25104214IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.871106208IPR003340B3 DNA binding domain
SMARTSM010191.8E-15106208IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-32107213IPR015300DNA-binding pseudobarrel domain
CDDcd100176.25E-19108206No hitNo description
PfamPF023627.7E-21108207IPR003340B3 DNA binding domain
PfamPF065073.9E-17227304IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDPSLGTEVP TKLWRAFAGK TAKVPPLNSL VYYFPQGHAA HASSPPNFSS NTPHSVPCWV  60
SDVQLLGSQH TDEVFAVLKL IPVPFSISEN PTPTDFFARA VETDSHAKVL TPSDANNGGG  120
FSVPNACAES VFPRLDKSVE KPAQDLSMRD VHGETWKFRH IYRGSPKRHL LTTGWSAFVN  180
AKMLASEDTV VFARGDDGVV CVALRRRMTA EGQNRLFWLP PEDVVRAAEL VASGDQFEVV  240
YYPNRGPAFC VEIHTVDRAL NFPWVRGVKI RMTVEGVKGF VNGSVLSALA ADRVRWPDSP  300
WELLEIQLNI GTARKKLVGE RGPEKELPLR GTPAQSTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-48930751369Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011624395.21e-141auxin response factor 16
RefseqXP_020524542.11e-141auxin response factor 16
RefseqXP_020524543.11e-141auxin response factor 16
RefseqXP_020524544.11e-141auxin response factor 16
RefseqXP_020524545.11e-141auxin response factor 16
TrEMBLW1PJ020.0W1PJ02_AMBTC; Auxin response factor
STRINGERN076840.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.19e-77auxin response factor 16
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]