PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00149.46 | ||||||||
Common Name | AMTR_s00149p00068500, LOC18437430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | NAC | ||||||||
Protein Properties | Length: 359aa MW: 40679.1 Da PI: 6.4283 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.2 | 1.8e-54 | 6 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkky 68 lppGfrFhPtdeelv +yLk+k+eg k+el evi+e+d+yk++Pw+Lp k + +++ ew+fF++rd+ky evm_27.model.AmTr_v1.0_scaffold00149.46 6 LPPGFRFHPTDEELVGYYLKRKIEGLKIEL-EVIPEIDLYKFDPWELPdKsFLPKRDMEWFFFCPRDRKY 74 79****************************.99**************96434556788************ PP NAM 69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++g+r+nrat++gyWkatgkd++++ +++++g kktLvfy+grap g +tdW+mheyrl evm_27.model.AmTr_v1.0_scaffold00149.46 75 PNGSRTNRATSAGYWKATGKDRKITMCHSSVTGFKKTLVFYRGRAPAGDRTDWIMHEYRL 134 **************************9*******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-60 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.225 | 6 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-29 | 7 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0071365 | Biological Process | cellular response to auxin stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MGPMSLPPGF RFHPTDEELV GYYLKRKIEG LKIELEVIPE IDLYKFDPWE LPDKSFLPKR 60 DMEWFFFCPR DRKYPNGSRT NRATSAGYWK ATGKDRKITM CHSSVTGFKK TLVFYRGRAP 120 AGDRTDWIMH EYRLSEDLAR GASSVQFQDA FALCRVIKRH DQGQKGPNHQ DEPKTKRTAI 180 PPLTLDVNKP LMEKPLQECR QGRGRIVKNP RKTIKNHILL QPDNPSDISQ SGYAESSRIG 240 SMKEMHSGDV MELPSGFPSP NISDENEITK NDPADHFEDM DCLSLYFKPT LGFGMCGDED 300 MGFQSHELED NIPFSTGISG FEFRNSILSP ICRQASGDGS TGELSSLWQL EDSQVIVI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-56 | 4 | 165 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-56 | 4 | 165 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-56 | 4 | 165 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-56 | 4 | 165 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-56 | 4 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-56 | 4 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-56 | 4 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-56 | 4 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-56 | 4 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-56 | 4 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-56 | 4 | 165 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-56 | 4 | 165 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-56 | 4 | 165 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-56 | 4 | 165 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00439 | DAP | Transfer from AT4G17980 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006847701.1 | 0.0 | NAC domain-containing protein 74 isoform X1 | ||||
TrEMBL | W1PH11 | 0.0 | W1PH11_AMBTC; Uncharacterized protein | ||||
STRING | ERN09282 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 7e-86 | NAC domain containing protein 71 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00149.46 |
Entrez Gene | 18437430 |
Publications ? help Back to Top | |||
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