PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00149.46
Common NameAMTR_s00149p00068500, LOC18437430
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 359aa    MW: 40679.1 Da    PI: 6.4283
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00149.46genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.21.8e-5461341128
                                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkky 68 
                                              lppGfrFhPtdeelv +yLk+k+eg k+el evi+e+d+yk++Pw+Lp k  + +++ ew+fF++rd+ky
  evm_27.model.AmTr_v1.0_scaffold00149.46   6 LPPGFRFHPTDEELVGYYLKRKIEGLKIEL-EVIPEIDLYKFDPWELPdKsFLPKRDMEWFFFCPRDRKY 74 
                                              79****************************.99**************96434556788************ PP

                                      NAM  69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                              ++g+r+nrat++gyWkatgkd++++  +++++g kktLvfy+grap g +tdW+mheyrl
  evm_27.model.AmTr_v1.0_scaffold00149.46  75 PNGSRTNRATSAGYWKATGKDRKITMCHSSVTGFKKTLVFYRGRAPAGDRTDWIMHEYRL 134
                                              **************************9*******************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-603158IPR003441NAC domain
PROSITE profilePS5100559.2256159IPR003441NAC domain
PfamPF023652.8E-297134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGPMSLPPGF RFHPTDEELV GYYLKRKIEG LKIELEVIPE IDLYKFDPWE LPDKSFLPKR  60
DMEWFFFCPR DRKYPNGSRT NRATSAGYWK ATGKDRKITM CHSSVTGFKK TLVFYRGRAP  120
AGDRTDWIMH EYRLSEDLAR GASSVQFQDA FALCRVIKRH DQGQKGPNHQ DEPKTKRTAI  180
PPLTLDVNKP LMEKPLQECR QGRGRIVKNP RKTIKNHILL QPDNPSDISQ SGYAESSRIG  240
SMKEMHSGDV MELPSGFPSP NISDENEITK NDPADHFEDM DCLSLYFKPT LGFGMCGDED  300
MGFQSHELED NIPFSTGISG FEFRNSILSP ICRQASGDGS TGELSSLWQL EDSQVIVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-56416515171NO APICAL MERISTEM PROTEIN
1ut4_B4e-56416515171NO APICAL MERISTEM PROTEIN
1ut7_A4e-56416515171NO APICAL MERISTEM PROTEIN
1ut7_B4e-56416515171NO APICAL MERISTEM PROTEIN
3swm_A3e-56416518174NAC domain-containing protein 19
3swm_B3e-56416518174NAC domain-containing protein 19
3swm_C3e-56416518174NAC domain-containing protein 19
3swm_D3e-56416518174NAC domain-containing protein 19
3swp_A3e-56416518174NAC domain-containing protein 19
3swp_B3e-56416518174NAC domain-containing protein 19
3swp_C3e-56416518174NAC domain-containing protein 19
3swp_D3e-56416518174NAC domain-containing protein 19
4dul_A4e-56416515171NAC domain-containing protein 19
4dul_B4e-56416515171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006847701.10.0NAC domain-containing protein 74 isoform X1
TrEMBLW1PH110.0W1PH11_AMBTC; Uncharacterized protein
STRINGERN092820.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.17e-86NAC domain containing protein 71
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]