PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00149.35
Common NameAMTR_s00149p00054910
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 296aa    MW: 30909.2 Da    PI: 9.5703
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00149.35genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45e-08100125227
                                              -S---SGGGGTS--TTTTT-SS-SSS CS
                                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                              kt+lC+ +     C +G++C+FaHg+
  evm_27.model.AmTr_v1.0_scaffold00149.35 100 KTRLCNKYNTPEGCTFGEKCHFAHGE 125
                                              8***********************96 PP
2zf-CCCH27.84.3e-09254278126
                                              --S---SGGGGTS--TTTTT-SS-SS CS
                                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                              ykt+ C +f + G C yG++C+FaHg
  evm_27.model.AmTr_v1.0_scaffold00149.35 254 YKTKMCENFPK-GLCTYGEKCSFAHG 278
                                              9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0893765IPR000571Zinc finger, CCCH-type
SMARTSM003564.63764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-53863IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-53962IPR000571Zinc finger, CCCH-type
PfamPF146080.854262No hitNo description
Gene3DG3DSA:4.10.1000.102.1E-1395128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-897129IPR000571Zinc finger, CCCH-type
SMARTSM003560.05398125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.07598126IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5100125IPR000571Zinc finger, CCCH-type
SuperFamilySSF547918.04E-15152234IPR004088K Homology domain, type 1
SMARTSM003223.0E-10157227IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.3E-15158228IPR004088K Homology domain, type 1
PROSITE profilePS5008414.068158222IPR004088K Homology domain, type 1
CDDcd001055.68E-13160222No hitNo description
PfamPF000136.3E-11160224IPR004088K Homology domain, type 1
SuperFamilySSF902291.13E-8251284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-14252283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.582253280IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4253279IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-6254278IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDPLVPYRKK AKGDAVASGN GFNHNSSFGE LGLAGLGSKS KPCTKFFSMV GCPFGEGCHF  60
SHYVPGGIHA VSQVQGLASA TRRPNSITST ATPTSASLVK TRLCNKYNTP EGCTFGEKCH  120
FAHGEKELGM SLSSDRTRDP AMAVGGPTRA VPTSFGASAT AKISVEASLA GAIIGKGGAH  180
SKHICRVTGA KLSIKDHETD KNLKNIELEG TFDQINQASA MVREIIMQNS VGNVATRPGL  240
GPAVAAGSGK VSNYKTKMCE NFPKGLCTYG EKCSFAHGAA ELRAYMQKYA INGNL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011624563.10.0zinc finger CCCH domain-containing protein 14 isoform X1
SwissprotQ7F8R08e-92C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLW1PNI40.0W1PNI4_AMBTC; Uncharacterized protein
STRINGERN092710.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.17e-66C3H family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]