PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00148.56
Common NameAMTR_s00148p00084540, LOC18995824
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 356aa    MW: 38564.7 Da    PI: 5.8746
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00148.56genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-17286336255
                                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                              +y+GVr ++ +g+++AeIrd      ++ +r++lg+f taeeAa a+++a+ k++g
  evm_27.model.AmTr_v1.0_scaffold00148.56 286 HYRGVRERP-WGKFAAEIRD----SaRHgARIWLGTFNTAEEAALAYDQAAYKMRG 336
                                              7*****888.**********....33236*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.4E-30285344IPR001471AP2/ERF domain
SMARTSM003801.8E-33286350IPR001471AP2/ERF domain
PfamPF008473.3E-13286336IPR001471AP2/ERF domain
PROSITE profilePS5103222.774286344IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21286345IPR016177DNA-binding domain
CDDcd000181.20E-28286344No hitNo description
PRINTSPR003671.5E-10287298IPR001471AP2/ERF domain
PRINTSPR003671.5E-10310326IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MNSALDRIIH HLLEESDDPS FPFLANSPPD SSITDAETSL ESNHFSPESS HISPESSKFS  60
PESSHILPEN FSASKKRRSE YSDSGCKSSL EEEDEEEEER FIQSALAIDL PGIQGSLTHA  120
PEAGQNRLGA RAGGRNRPVC RFPGWVEEKK RFKASDSVSL PNKTGLQSGF RFRSPIGEET  180
GSSFCLGPWF SGDWDKLPLN VNDSDEMVLY GILEEAASLK IDSSTKKSAH TLNVSTLASE  240
DSGSSVEGKA TPMKELAVNV KDSGPASRAS NPAPSSKPSG LKKGRHYRGV RERPWGKFAA  300
EIRDSARHGA RIWLGTFNTA EEAALAYDQA AYKMRGSRAL LNFALDPALA KPIAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-30283345264ATERF1
3gcc_A2e-30283345264ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00548DAPTransfer from AT5G47220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006846818.10.0uncharacterized protein LOC18995824
TrEMBLW1PKW40.0W1PKW4_AMBTC; Uncharacterized protein
STRINGERN083990.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.14e-29ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]