PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00148.24
Common NameAMTR_s00148p00046020, LOC18995790
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ARF
Protein Properties Length: 728aa    MW: 80410.9 Da    PI: 6.8528
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00148.24genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.3e-23129230199
                                              EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TT CS
                                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkG 64 
                                              f k+lt+sd+++ g +++p+ +ae++      +  ++ + t+  +d +g++W++++iyr++++r++lt+G
  evm_27.model.AmTr_v1.0_scaffold00148.24 129 FAKTLTQSDANNGGGFSVPRYCAETIfprldySAHPPIQ-TVLAKDVHGNTWKFRHIYRGTPRRHLLTTG 197
                                              89****************************994444554.9999************************** PP

                                              HHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                       B3  65 WkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                              W+ Fv++++L +gD++vF   ++ ++el+++++r+
  evm_27.model.AmTr_v1.0_scaffold00148.24 198 WSTFVNEKKLVAGDSIVFL--RTANGELCMGIRRA 230
                                              *******************..4578999****997 PP
2Auxin_resp109.82.9e-36315398183
                               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdl 69 
                                              aa  a+++++FevvY+Pra+t+eF+vk+  v++al++++ +GmRfkmafetedss++++ +Gt++ v+ +
  evm_27.model.AmTr_v1.0_scaffold00148.24 315 AAALAASGQPFEVVYYPRAGTPEFCVKAGAVKSALRMQWVPGMRFKMAFETEDSSRISWfMGTISIVQVA 384
                                              678899**************************************************************** PP

                               Auxin_resp  70 dpvrWpnSkWrsLk 83 
                                              dpv+WpnS+Wr+L+
  evm_27.model.AmTr_v1.0_scaffold00148.24 385 DPVHWPNSPWRLLQ 398
                                              ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-36123233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-29126240IPR015300DNA-binding pseudobarrel domain
CDDcd100175.37E-21128229No hitNo description
PROSITE profilePS5086312.957129231IPR003340B3 DNA binding domain
PfamPF023629.0E-22129230IPR003340B3 DNA binding domain
SMARTSM010192.1E-20129231IPR003340B3 DNA binding domain
PfamPF065079.4E-32315398IPR010525Auxin response factor
PROSITE profilePS5174517.661641721IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MMGRDSLKDL SAPLREAEKC LDSQLWHACA GGMVQMPPVN SKVFYFPQGH AEHAQGPVDF  60
SKTALRFPPL ILCRITSIKF MADPETDEVY AKIHLVPLRS DDFDGMDENN SGVFSNCSGC  120
EVSEKPSSFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY SAHPPIQTVL AKDVHGNTWK  180
FRHIYRGTPR RHLLTTGWST FVNEKKLVAG DSIVFLRTAN GELCMGIRRA TRGISGGESQ  240
GWSPIPGSCV SHYGLSRLEA KILGVGGSEG FSMFMREEEG RLMRSSSGGI KGGNSNSDGF  300
LRGRNKVSVE AVVEAAALAA SGQPFEVVYY PRAGTPEFCV KAGAVKSALR MQWVPGMRFK  360
MAFETEDSSR ISWFMGTISI VQVADPVHWP NSPWRLLQVT WDEQDLLQNV KRVNPWLVEV  420
VSTIPSVQLT AFSPAKKKLR LSPHLDFPID STFHPLSSNI DPTFASLSSN LNPTPLTSSM  480
PRPTNPFQGL PDYHVPAGIQ GARQSQFGVA LSNLHLNRPN STLFLDVLRR PEHVSTELII  540
GSSSTQDNVS CLLTVGSPSL NYKKSENHKP TPFLLFGKTI HMEPQVSAVE STDGHEEVGS  600
PALTVNSSPE QIRERSELFL EKNELSLDNK REGGKWVEEG NGHCKVFMES EELGRSLDLS  660
AFGSYEELYR KLATWFGIER SETLNHMLYR DESGTVKQTG DEPYSEFMRT ARRLTILSDS  720
SSDNMGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A6e-682141919353Auxin response factor 1
4ldy_B6e-682141919353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006846786.10.0auxin response factor 18
RefseqXP_020524326.10.0auxin response factor 18
RefseqXP_020524328.10.0auxin response factor 18
RefseqXP_020524329.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLW1PEJ10.0W1PEJ1_AMBTC; Auxin response factor
STRINGERN083670.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]