PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00147.19
Common NameAMTR_s00147p00053080
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GATA
Protein Properties Length: 207aa    MW: 23054 Da    PI: 9.3952
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00147.19genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.23e-20106141136
                                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 
                                              C+ C+ttkTplWR gp g+++LCnaCG++yrk++++
  evm_27.model.AmTr_v1.0_scaffold00147.19 106 CVDCNTTKTPLWRTGPAGPRSLCNACGIRYRKRRRM 141
                                              *********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.7E-17100151IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.6100164IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-13103141No hitNo description
Gene3DG3DSA:3.30.50.105.4E-16104140IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.74E-15105141No hitNo description
PfamPF003208.7E-18106141IPR000679Zinc finger, GATA-type
PROSITE patternPS003440106131IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MMPIDLTHHH HRHHEHGDDD GSAQSHVLLR HPIIRISWNS SHDHHNHEDH KHKNGFFSEK  60
EAAVNARGKR ATSSMEGCTD DSTNVNNLEG STTSISVAMS RAIRACVDCN TTKTPLWRTG  120
PAGPRSLCNA CGIRYRKRRR MGLLESGFGG PNAVLKKEKS NQKRFGKRFL WGEEEQAAVL  180
LMALSCGLNE KKMVELASFV NTFYGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135139RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020521893.11e-154GATA transcription factor 16-like
TrEMBLW1P8V41e-153W1P8V4_AMBTC; Uncharacterized protein
STRINGERN043531e-154(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.15e-23GATA transcription factor 16
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]