PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00145.39
Common NameAMTR_s00145p00098450, LOC18434151
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 214aa    MW: 25153.3 Da    PI: 5.5609
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00145.39genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-17855148
                                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                             +g+WT++Ed++lv++v ++G ++W+ Ia+  g++R++k+c++rw +yl
  evm_27.model.AmTr_v1.0_scaffold00145.39  8 KGPWTEQEDLQLVCYVGLFGERRWDFIAKVSGLNRSGKSCRLRWVNYL 55
                                             79********************************************97 PP

2Myb_DNA-binding49.31.2e-1561106148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                              rg+ T++E+ l++d+  ++G++ W++Iar+++ gRt++++k++w++++
  evm_27.model.AmTr_v1.0_scaffold00145.39  61 RGKITPQEECLILDLQSRWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106
                                              8999******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.781155IPR017930Myb domain
SuperFamilySSF466897.11E-296102IPR009057Homeodomain-like
SMARTSM007177.3E-16757IPR001005SANT/Myb domain
PfamPF002491.7E-16855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-21962IPR009057Homeodomain-like
CDDcd001671.15E-91055No hitNo description
PROSITE profilePS5129424.67356110IPR017930Myb domain
SMARTSM007175.6E-1560108IPR001005SANT/Myb domain
PfamPF002492.6E-1361105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-2363109IPR009057Homeodomain-like
CDDcd001676.04E-965106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MACIEIRKGP WTEQEDLQLV CYVGLFGERR WDFIAKVSGL NRSGKSCRLR WVNYLRPDLK  60
RGKITPQEEC LILDLQSRWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QERRNDPSPQ  120
SCSSCLTSDK EREGRMLEKE GTKLNKEEGG EEGKSLMEEI WKEIEDYEGE FKFSSSSSME  180
SPLWEYSWDS LWKMETGEEE SLAPMCDPHD RES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2651101105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-26511024128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006844290.11e-154transcription factor MYB59
SwissprotQ4JL841e-69MYB59_ARATH; Transcription factor MYB59
TrEMBLW1PFW41e-153W1PFW4_AMBTC; Uncharacterized protein
STRINGERN059651e-154(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-66myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  5. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]