PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00145.39 | ||||||||
Common Name | AMTR_s00145p00098450, LOC18434151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB | ||||||||
Protein Properties | Length: 214aa MW: 25153.3 Da PI: 5.5609 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv++v ++G ++W+ Ia+ g++R++k+c++rw +yl evm_27.model.AmTr_v1.0_scaffold00145.39 8 KGPWTEQEDLQLVCYVGLFGERRWDFIAKVSGLNRSGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.2e-15 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++E+ l++d+ ++G++ W++Iar+++ gRt++++k++w++++ evm_27.model.AmTr_v1.0_scaffold00145.39 61 RGKITPQEECLILDLQSRWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106 8999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.781 | 1 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-29 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-16 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-21 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-9 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 24.673 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 5.6E-15 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-13 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-23 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.04E-9 | 65 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MACIEIRKGP WTEQEDLQLV CYVGLFGERR WDFIAKVSGL NRSGKSCRLR WVNYLRPDLK 60 RGKITPQEEC LILDLQSRWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QERRNDPSPQ 120 SCSSCLTSDK EREGRMLEKE GTKLNKEEGG EEGKSLMEEI WKEIEDYEGE FKFSSSSSME 180 SPLWEYSWDS LWKMETGEEE SLAPMCDPHD RES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-26 | 5 | 110 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-26 | 5 | 110 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00600 | PBM | Transfer from AT5G59780 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006844290.1 | 1e-154 | transcription factor MYB59 | ||||
Swissprot | Q4JL84 | 1e-69 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | W1PFW4 | 1e-153 | W1PFW4_AMBTC; Uncharacterized protein | ||||
STRING | ERN05965 | 1e-154 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 1e-66 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00145.39 |
Entrez Gene | 18434151 |
Publications ? help Back to Top | |||
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