PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00142.23 | ||||||||
Common Name | AMTR_s00142p00045170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | Trihelix | ||||||||
Protein Properties | Length: 259aa MW: 29448 Da PI: 5.1858 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 42 | 2.5e-13 | 2 | 83 | 9 | 86 |
trihelix 9 aLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrt...sess 76 +L+ea e+ + +r++l+ W+evsk++ ++ r+ qC+++++ l+k++k++k++ + + +ss evm_27.model.AmTr_v1.0_scaffold00142.23 2 VLLEAWGERFLQHGRKSLRSDEWAEVSKRVsASSETPRTEAQCRNRLDTLKKKFKREKQRIAEAKalgHTSS 73 789999999999999***************777889**********************99887743447899 PP trihelix 77 stcpyfdqle 86 s++pyf++++ evm_27.model.AmTr_v1.0_scaffold00142.23 74 SKWPYFKKMD 83 9********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51029 | 9.049 | 1 | 90 | IPR006578 | MADF domain |
Pfam | PF13837 | 1.6E-17 | 2 | 85 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MVLLEAWGER FLQHGRKSLR SDEWAEVSKR VSASSETPRT EAQCRNRLDT LKKKFKREKQ 60 RIAEAKALGH TSSSKWPYFK KMDRLMSQVS SATPQASPQA PARLACGLDS GEFVFGNPRI 120 CLNPPGDSPE SSDSGSGDSP PPLPKRARVS DWGSDGGSFR LLADSIQRFG EIYEKIENSK 180 RQQMMELERM RMDFQRELEL QKRHIMERAQ AEIAKMREEE EEEEEDEDEE IDVSVTNGYE 240 ESTAQRANCV WGLFVNLV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006844357.2 | 0.0 | histone acetyltransferase KAT6A | ||||
TrEMBL | W1P821 | 0.0 | W1P821_AMBTC; Uncharacterized protein | ||||
STRING | ERN06032 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP487 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 6e-46 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00142.23 |
Publications ? help Back to Top | |||
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