PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00140.39
Common NameAMTR_s00140p00087970, LOC18432954
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 638aa    MW: 71096.6 Da    PI: 4.4398
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00140.39genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.4e-5261341129
                                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkky 68 
                                              lppGfrFhPtdee+v++yLk+kv gk+l++ ++i+++d+yk+ePwdLp +  +k+++ ewyfFs+ dkk+
  evm_27.model.AmTr_v1.0_scaffold00140.39   6 LPPGFRFHPTDEEIVSYYLKRKVCGKSLHC-NAISQIDLYKSEPWDLPgQsLLKTRDLEWYFFSPLDKKH 74 
                                              79****************************.89***************6446667778************ PP

                                      NAM  69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                               +g+r+nrat+ g+Wk+tgkd+++ + +g++vg+kktLvf+ grap+ge+t+Wvmheyrle
  evm_27.model.AmTr_v1.0_scaffold00140.39  75 GKGSRTNRATEIGFWKTTGKDRPIRR-NGRTVGMKKTLVFHVGRAPNGERTNWVMHEYRLE 134
                                              *************************9.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-633156IPR003441NAC domain
PROSITE profilePS5100558.816156IPR003441NAC domain
PfamPF023656.5E-287133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MGKVSLPPGF RFHPTDEEIV SYYLKRKVCG KSLHCNAISQ IDLYKSEPWD LPGQSLLKTR  60
DLEWYFFSPL DKKHGKGSRT NRATEIGFWK TTGKDRPIRR NGRTVGMKKT LVFHVGRAPN  120
GERTNWVMHE YRLEDKELND KGIVQDAYVL CRIFQKNGPG PRNGAQYGAP FNEEEWEDDV  180
VADSLIPLPM VSGVAPSSEP QMNQLVVVPK QEMDELVSDQ APILDGSSGS TNENIFSSYI  240
KSHAHDLKDE DNVQLQPANE DDFAWLSHEN GFLQHNGDNQ ELNAGLLIDG FHAYDLDDME  300
ENAYDGEAHQ MLTPIDDDSF LEVNDILKHI DTQKCEAETV EPEAEMVEPF TYFDTVIDNP  360
VIEDGSFLEM KDVLNPLEPE PDESEFLDDI LNFFDTVDDD SNPVLPDLSA RLPVNEDYKP  420
EQSKMVTKVD VEGSLQGYAA NPHTHETTHV HGVEGASSSE QKADPFTGTG DKFIKGKVDK  480
ISEPTDVPSD ESFDGLFSKR FQNMLGCIPA RPALAAEYPT KGGLKLSQNE AYAGASINVT  540
AATVHITHMS FMGSDTKAWP LHDSRHMDYL LSDGIVMDDL MVRKSSVSLG ELVLGTFSSD  600
MVVVLRGGFA FFFMLLVLLG VSYRFGKLKV FFGSALL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-51215611168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843116.10.0NAC domain-containing protein 78
TrEMBLW1PB150.0W1PB15_AMBTC; Uncharacterized protein
STRINGERN047910.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-89NAC domain containing protein 2
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]