PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00140.17 | ||||||||
Common Name | AMTR_s00140p00045380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 368aa MW: 41216.4 Da PI: 4.9692 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.2 | 9e-18 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ri++k +r+v+fskR+ g++KKA L L++aev ++i+s+ g+l++y evm_27.model.AmTr_v1.0_scaffold00140.17 10 RISDKNKRHVSFSKRKGGLFKKAGKLASLTGAEVGIMIISEGGRLFTYG 58 8**********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.2E-19 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.955 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-12 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.89E-20 | 4 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-18 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-12 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-12 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MTHRNKEITR ISDKNKRHVS FSKRKGGLFK KAGKLASLTG AEVGIMIISE GGRLFTYGSP 60 SIDDIITKYL QGPQLLNESH RKHLQCLSTL HSKIQSQFED ATELFNDLQT LKEKWVKLDM 120 HSKDIFEMEI QELKEYVSFL QVLREKAFML PENGDNNVNL DCVESSCQTL YQENSHEDLT 180 STSSLPKHLI HQQRVKDMNI HLCSGEFGPK HLYPEYENVE MGCSFGLSEV SDLDHHGSIN 240 AMNVCFSNGE CGPLFLCPQD EGIEISSSLD LSETCDWNHL GSIKYMNSFL CNGEFRPKNL 300 YPQDENFEMG CSFGLSEISD LNHHGSINGM NVCFSNGEYE PPFMCSEDEG IGMSNSLGLS 360 GIVAGII* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020522127.1 | 0.0 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | W1PAQ9 | 0.0 | W1PAQ9_AMBTC; Uncharacterized protein | ||||
STRING | ERN04769 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 5e-08 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00140.17 |
Publications ? help Back to Top | |||
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