PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00137.41 | ||||||||
Common Name | AMTR_s00137p00087340, LOC18421847 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 22658.8 Da PI: 7.2647 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99 | 4.6e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeA 65 +C++C+vlr++C+++C+l+ ++ +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA evm_27.model.AmTr_v1.0_scaffold00137.41 2 SCNGCRVLRKGCSEGCMLRSCLqwidgAEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLYEA 71 6*********************9999888999************************************** PP DUF260 66 earardPvyGavgvilklqqqleqlkaelall 97 + r+ +Pv+Gavg++++++++++q+++e++l+ evm_27.model.AmTr_v1.0_scaffold00137.41 72 CGRTVNPVNGAVGLLWSGNWHVCQAAVEVVLR 103 ***************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.24 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MSCNGCRVLR KGCSEGCMLR SCLQWIDGAE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PALFQSLLYE ACGRTVNPVN GAVGLLWSGN WHVCQAAVEV VLRGGTLRPL PEFLAGNIPG 120 NLHYPDDFSE VSTAKDKRVC PKSKEKDEVS ESGEVDLCLG LSHPSTFWPG KRPEKSRPST 180 PSMNSEGSVT CNESGSQLLN EPRVLNLFV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006826695.1 | 1e-154 | LOB domain-containing protein 38 | ||||
Refseq | XP_011620653.1 | 1e-154 | LOB domain-containing protein 38 | ||||
Swissprot | Q9SN23 | 7e-71 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | W1NDW0 | 1e-152 | W1NDW0_AMBTC; Uncharacterized protein | ||||
STRING | ERM93932 | 1e-153 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 3e-73 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00137.41 |
Entrez Gene | 18421847 |
Publications ? help Back to Top | |||
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