PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00133.30
Common NameAMTR_s00133p00071910, LOC18432588
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 362aa    MW: 40573.4 Da    PI: 6.2997
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00133.30genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-171461148
                                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                             +g+WT+eEd +++ ++  +G+g+W++++++ g++R++k+c++rw +yl
  evm_27.model.AmTr_v1.0_scaffold00133.30 14 KGPWTPEEDAKILAYISGHGTGNWTAVPKKAGLKRCGKSCRLRWTNYL 61
                                             79********************************************97 PP
2Myb_DNA-binding49.69.4e-1668110246
                                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                              +r+T++E++l+v +++  G++ W++Ia++++ gRt++++k++w++
  evm_27.model.AmTr_v1.0_scaffold00133.30  68 DRFTPQEEDLIVSLHAAIGSR-WSLIAAHLP-GRTDNDIKNYWNT 110
                                              69*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.93965IPR017930Myb domain
SuperFamilySSF466895.99E-3012108IPR009057Homeodomain-like
SMARTSM007173.5E-141363IPR001005SANT/Myb domain
PfamPF002493.8E-161461IPR001005SANT/Myb domain
CDDcd001674.67E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129418.51466116IPR017930Myb domain
SMARTSM007173.7E-1466114IPR001005SANT/Myb domain
CDDcd001671.85E-1069112No hitNo description
PfamPF002493.4E-1469110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGRPPCCDKS SVRKGPWTPE EDAKILAYIS GHGTGNWTAV PKKAGLKRCG KSCRLRWTNY  60
LRPDLKHDRF TPQEEDLIVS LHAAIGSRWS LIAAHLPGRT DNDIKNYWNT KLRKKLREMG  120
IDPVTHRPIS QILADYGNMG LTNPLKYHGR RHHHYRHTSL NPEPENKLTP NLGELHHFNQ  180
NTNNLPSTQE AAALPNNYNN HPWDLLAQIH AIKFASEASN CSSETPVIAE NANPVTKISN  240
EAATETETSQ QVQDYPEYSS SNSGFTWSEF LLDDELCASQ PNGDTELTPL LFEKEMKEEK  300
DVLGPLHPIQ MVDGVVGSPS ISPSGRACDD SFVHGLLEGD RQSLLWEFPE LFDNPLPWCN  360
Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141167108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116KLRKKLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006842754.10.0transcription factor MYB35 isoform X2
TrEMBLW1P9R40.0W1P9R4_AMBTC; Uncharacterized protein
STRINGERN044290.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.11e-72MYB family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]