PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00133.18 | ||||||||
Common Name | AMTR_s00133p00053750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | TCP | ||||||||
Protein Properties | Length: 112aa MW: 12690.3 Da PI: 10.07 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 87.6 | 2.9e-27 | 31 | 100 | 2 | 71 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssas 71 g+kd hsk++T +RdR vRl a++a++f+d+qd+LG+d++sk+ +W +++akpai+el + + ++s evm_27.model.AmTr_v1.0_scaffold00133.18 31 IGRKDGHSKVCTVCWPRDRCVRLAAHTAIQFYDVQDRLGYDRPSKAMDWFINKAKPAIDELKKRTHGQSS 100 589**********************************************************999444442 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.9E-24 | 32 | 98 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.009 | 33 | 91 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
LENQRRRLSF QSRGGEREIV EVEGGHIVRA IGRKDGHSKV CTVCWPRDRC VRLAAHTAIQ 60 FYDVQDRLGY DRPSKAMDWF INKAKPAIDE LKKRTHGQSS SHGNAPSFWG D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 9e-16 | 38 | 91 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 9e-16 | 38 | 91 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 95 | KKRTH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011623141.1 | 1e-60 | transcription factor PCF5, partial | ||||
Swissprot | Q8LPR5 | 1e-35 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | W1P3H5 | 1e-77 | W1P3H5_AMBTC; Uncharacterized protein (Fragment) | ||||
STRING | ERN04417 | 2e-78 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 9e-29 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00133.18 |