PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00130.14
Common NameAMTR_s00130p00044000, LOC18425614
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WRKY
Protein Properties Length: 282aa    MW: 31054.4 Da    PI: 5.6564
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00130.14genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.83.1e-3088146259
                                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                              +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY  eHnh+
  evm_27.model.AmTr_v1.0_scaffold00130.14  88 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPSMLVVTYACEHNHP 146
                                              69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.06482148IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-3183148IPR003657WRKY domain
SuperFamilySSF1182903.4E-2685148IPR003657WRKY domain
SMARTSM007748.3E-3687147IPR003657WRKY domain
PfamPF031066.9E-2689146IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MELHQHKVAC FNSFNESTEE KTQEPEILSD SGQVHARQPV LGGSKTETKG AAASSPKRRR  60
VVEKRVISVP IGGDLEGSRP RGEGAPPSDS WAWRKYGQKP IKGSPYPRGY YRCSSSKGCP  120
ARKQVERSRV DPSMLVVTYA CEHNHPWPPT SSRGPPNNNN PRIPSKTLKE TSPENHKISD  180
HPPEITPEME FEAGDGFQSH DLCWFPGVDM LQSSAYVPDD GGEGVFGREV LGDEEVFRQE  240
INGKDEECFA DLGELPECSV VFRRGLFEIQ EAAASWCGNT G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-2064148679Disease resistance protein RRS1
5w3x_D5e-2064148679Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15660KRRRV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006830221.10.0probable WRKY transcription factor 65
TrEMBLW1NPD30.0W1NPD3_AMBTC; Uncharacterized protein
STRINGERM976370.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.21e-53WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]