PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00129.96 | ||||||||
Common Name | AMTR_s00129p00119770, LOC18424005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 304aa MW: 33326.1 Da PI: 4.533 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 92 | 141 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r+++ +g+W+AeIrdp gk r++lg+f taeeAa+a++a +++++g evm_27.model.AmTr_v1.0_scaffold00129.96 92 VFRGIRQRP-WGKWAAEIRDP---GKGVRVWLGTFNTAEEAARAYDAEARRIRG 141 59*******.**********8...545*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.8E-32 | 92 | 150 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-12 | 92 | 141 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.314 | 92 | 149 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-38 | 92 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.15E-22 | 92 | 150 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.5E-11 | 93 | 104 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.48E-33 | 93 | 151 | No hit | No description |
PRINTS | PR00367 | 2.5E-11 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0071456 | Biological Process | cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MCGGAIISDF IPTNRSRRIT RNQIKSPFID IDDDFEADFQ EFKDESDEGE EDIKPFAFPK 60 GGITEQGGYL KVPELKTSSL PERSAKRKRK NVFRGIRQRP WGKWAAEIRD PGKGVRVWLG 120 TFNTAEEAAR AYDAEARRIR GPKAKVNFPN DPVPHVPKKA KRSPPIAIGA SGPSDVVHIF 180 SDQGSNSFDC TDLSWDQNEV NEISSGLATC PEGSELASTD VDGGGLDLSC KVSAKSEGDM 240 NGNPAEKLSE ELSAFESYMK FFQIPYLEGV EERVPVADTC QDGGGSMDLW SFDDLPFIEG 300 TAF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-21 | 93 | 149 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00230 | DAP | Transfer from AT1G72360 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006828662.1 | 0.0 | ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | W1NKN9 | 0.0 | W1NKN9_AMBTC; Uncharacterized protein | ||||
STRING | ERM96078 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.2 | 1e-32 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00129.96 |
Entrez Gene | 18424005 |
Publications ? help Back to Top | |||
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