PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00125.13

Common Name

AMTR_s00125p00062940

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

C2H2

Protein Properties

Length: 423aa MW: 46246.8 Da PI: 9.8646

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00125.13	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	9.9e-05	189	211	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ + ++ L++H + H evm_27.model.AmTr_v1.0_scaffold00125.13 189 TCHKCGEQYAKWEALETHHLSkH 211 7*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	190	211	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.44E-24	213	421	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.2E-9	221	398	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MPTVWFTLKR SLHCKSEPSE VHDPKSRRHL STILTRKTGR SGCSRSISNL KDVIHGSKRH 60 IEKPPSCSPR SIGSSEFLNP ITHEVILSNS KCELKISGFN GHTDGDSTFV GTLRPGTPGP 120 GGHHAVNCSP SFRGGATTPP RKSPGFFSDR NGSKYGGSSI STAIFGGTGL STSGRRSSHE 180 ADGHFSSVTC HKCGEQYAKW EALETHHLSK HAVTELVEGD SSRKIVEIIC RTSWLKSENN 240 CGRIERVLKV HNMQKTLARF EEYREMVKIK ASKLPKKHPR CLADGNELLR FYGSTITCSL 300 GMNGFSNLCN SEKCSVCRII RHGFSTKKEG KGGIGVFTTS TSGRAYESIE LFEENPSLRK 360 ALLVCRVIAG RVHRPLDNMQ ALSGQSGFDS VAGKVGLYSN IEELYLLNPR ALLPCFVVIC 420 KP*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MPTVWFTLKR SLHCKSEPSE VHDPKSRRHL STILTRKTGR SGCSRSISNL KDVIHGSKRH  60
IEKPPSCSPR SIGSSEFLNP ITHEVILSNS KCELKISGFN GHTDGDSTFV GTLRPGTPGP  120
GGHHAVNCSP SFRGGATTPP RKSPGFFSDR NGSKYGGSSI STAIFGGTGL STSGRRSSHE  180
ADGHFSSVTC HKCGEQYAKW EALETHHLSK HAVTELVEGD SSRKIVEIIC RTSWLKSENN  240
CGRIERVLKV HNMQKTLARF EEYREMVKIK ASKLPKKHPR CLADGNELLR FYGSTITCSL  300
GMNGFSNLCN SEKCSVCRII RHGFSTKKEG KGGIGVFTTS TSGRAYESIE LFEENPSLRK  360
ALLVCRVIAG RVHRPLDNMQ ALSGQSGFDS VAGKVGLYSN IEELYLLNPR ALLPCFVVIC  420
KP*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020517690.1	0.0	uncharacterized protein LOC18425453
Refseq	XP_020517691.1	0.0	uncharacterized protein LOC18425453
TrEMBL	W1NR64	0.0	W1NR64_AMBTC; Uncharacterized protein
STRING	ERM97480	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP661	14	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-171	C2H2 family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00125.13

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]