PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00122.67 | ||||||||
Common Name | AMTR_s00122p00129760, LOC18425034 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | BES1 | ||||||||
Protein Properties | Length: 205aa MW: 22995.8 Da PI: 9.8473 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 143.7 | 1.7e-44 | 40 | 134 | 3 | 96 |
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkg 72 + r+p+++ErEnn+ RER+RRa+aa+i+aGLRa+Gny+lp ++D+neVlkALc+eAGw v+dDGttyrk evm_27.model.AmTr_v1.0_scaffold00122.67 40 TLRRPSARERENNRWRERKRRAVAARIFAGLRAYGNYNLPTHSDQNEVLKALCTEAGWHVDDDGTTYRKN 109 679*****************************************************************88 PP DUF822 73 skpl.eeaeaagssasaspesslqs 96 + + ++++ + +s+++++ + + evm_27.model.AmTr_v1.0_scaffold00122.67 110 TIAKsKKPSEMEQSKEVEKADEAKP 134 7666566667777776665555443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 6.3E-40 | 42 | 134 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MENGREERGR NVRGCIKRTA GPWIVRRRKG GSKGDEVAVT LRRPSARERE NNRWRERKRR 60 AVAARIFAGL RAYGNYNLPT HSDQNEVLKA LCTEAGWHVD DDGTTYRKNT IAKSKKPSEM 120 EQSKEVEKAD EAKPDLNLLP HEKPDASASQ LQKIDSPFLI MQQKHGIAGT DVQVKYEDAL 180 QSSKIDSSSG PLESSTEAFL CGFW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 7e-18 | 42 | 108 | 372 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 7e-18 | 42 | 108 | 372 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 7e-18 | 42 | 108 | 372 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 7e-18 | 42 | 108 | 372 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006829668.1 | 1e-152 | protein BZR1 homolog 3 | ||||
TrEMBL | W1NQJ5 | 1e-150 | W1NQJ5_AMBTC; Uncharacterized protein | ||||
STRING | ERM97084 | 1e-151 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP10084 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19350.6 | 1e-18 | BES1 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00122.67 |
Entrez Gene | 18425034 |
Publications ? help Back to Top | |||
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