PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00119.82 | ||||||||
Common Name | AMTR_s00119p00105590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB | ||||||||
Protein Properties | Length: 402aa MW: 45567.4 Da PI: 9.2572 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3e-16 | 138 | 183 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W+ Ia+++ gR++k+c++rw++ evm_27.model.AmTr_v1.0_scaffold00119.82 138 RGHWRPAEDAKLKELVAQFGPQNWNVIAERLE-GRSGKSCRLRWFNQ 183 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56 | 9.3e-18 | 190 | 233 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ evm_27.model.AmTr_v1.0_scaffold00119.82 190 RRAFSEEEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 233 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.224 | 133 | 184 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-14 | 137 | 186 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.72E-27 | 138 | 231 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-15 | 138 | 183 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 139 | 191 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.35E-12 | 141 | 182 | No hit | No description |
PROSITE profile | PS51294 | 26.912 | 185 | 239 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-15 | 189 | 237 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 190 | 232 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-20 | 192 | 238 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.41E-7 | 201 | 232 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MSEPNPYSQK IRNGFSEIGF QGDFMGSLSY PHQRTSNSHS NSNSNSESYS KSPKALGLFS 60 SSSSGETQSK REMGFQVLSP AKQSKRKVLS FQSSMEDSER KGGTEDCYRD ERESHEEEPM 120 GNCGGKENED RHSKLCARGH WRPAEDAKLK ELVAQFGPQN WNVIAERLEG RSGKSCRLRW 180 FNQLDPRINR RAFSEEEEER LLAAHRLYGN KWAMIARLFP GRTDNAVKNH WHVIMARKYR 240 EQSNAYRRRK SLPQQQQPTM QRKVETSNGR GASDSSILSN RDESASTCTD LSLNSSNSRA 300 FPGFYSRFGT LQHQGEEEKN KALGNGTMEK SEGPTNGFYF SLPPPPQMVL LKQSDSEFLQ 360 TSSMVGESRR ERDHQFVYGE INHKSEKMNL LFIDFLGVGA T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-31 | 138 | 238 | 7 | 107 | B-MYB |
1h88_C | 2e-30 | 138 | 238 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-30 | 138 | 238 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006829839.3 | 0.0 | myb-like protein AA | ||||
TrEMBL | W1NQ62 | 0.0 | W1NQ62_AMBTC; Uncharacterized protein | ||||
STRING | ERM97255 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 7e-70 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00119.82 |
Publications ? help Back to Top | |||
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