PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00119.73

Common Name

AMTR_s00119p00095480, LOC18425201

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

G2-like

Protein Properties

Length: 413aa MW: 45468.8 Da PI: 7.6364

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00119.73	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.9	2.2e-33	42	96	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerFveav+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl evm_27.model.AmTr_v1.0_scaffold00119.73 42 KPRLKWTPELHERFVEAVAQLGGADKATPKNVMRVMGIPGLTLYHLKSHLQKYRL 96 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.839	39	99	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.7E-32	40	97	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.35E-17	41	97	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-23	42	97	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-9	44	95	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-24	142	188	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MYYQGKNCFS SSRATMPPER PLLLHGANIQ GDPGLVLSTD AKPRLKWTPE LHERFVEAVA 60 QLGGADKATP KNVMRVMGIP GLTLYHLKSH LQKYRLSKNL RSQSNGSDKN GPAAAAERMS 120 HTNGPHMGMA NMAVSGTNKG LQINEALQMH IEVQRRLHEQ LEVQRHLQLR IEAQGKYLQS 180 VLEKAQETLA KQNPGSSGLE ATRAQISELV SQVSAECLNS AFSGLTEAPS LNNQQAQKSH 240 LADCSMDSCL TSCEGPQKDQ ETQNISIGLG YHSNSLLWQK AEREEFRVQR PNHSTGESLK 300 DTKHYSPSPE RKMHLLTSSF GDTINNVRAP GDKGACSTNS DARRKERGFE GACGEPPRKR 360 SVASRTQALD IEQTEVFDRL SNHTAVLDLN AHDENDASSE CKEFDLNGFS WS*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MYYQGKNCFS SSRATMPPER PLLLHGANIQ GDPGLVLSTD AKPRLKWTPE LHERFVEAVA  60
QLGGADKATP KNVMRVMGIP GLTLYHLKSH LQKYRLSKNL RSQSNGSDKN GPAAAAERMS  120
HTNGPHMGMA NMAVSGTNKG LQINEALQMH IEVQRRLHEQ LEVQRHLQLR IEAQGKYLQS  180
VLEKAQETLA KQNPGSSGLE ATRAQISELV SQVSAECLNS AFSGLTEAPS LNNQQAQKSH  240
LADCSMDSCL TSCEGPQKDQ ETQNISIGLG YHSNSLLWQK AEREEFRVQR PNHSTGESLK  300
DTKHYSPSPE RKMHLLTSSF GDTINNVRAP GDKGACSTNS DARRKERGFE GACGEPPRKR  360
SVASRTQALD IEQTEVFDRL SNHTAVLDLN AHDENDASSE CKEFDLNGFS WS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006829830.1	0.0	myb-related protein 2
Swissprot	Q9SQQ9	1e-110	PHL9_ARATH; Myb-related protein 2
TrEMBL	W1NNF9	0.0	W1NNF9_AMBTC; Uncharacterized protein
STRING	ERM97246	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-112	G2-like family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00119.73
Entrez Gene	18425201

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]