PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00119.25 | ||||||||
Common Name | AMTR_s00119p00045570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | NAC | ||||||||
Protein Properties | Length: 401aa MW: 45082.8 Da PI: 8.1962 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.5 | 3.5e-55 | 20 | 147 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat 70 lppGfrFhPtdeel++ yL +kv + ++++ ++i e+d++k+ePwdLp k+k +ekewy F+ rd+ky+t evm_27.model.AmTr_v1.0_scaffold00119.25 20 LPPGFRFHPTDEELITSYLIEKVMNGSFTA-RAIGEADLNKCEPWDLPWKAKMGEKEWYVFCLRDRKYPT 88 79*************************999.89***************888999**************** PP NAM 71 gkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 g r+nrat++gyWkatgkdke+++ +++lvg+kktLvfykgrapkgekt+Wvmheyrle evm_27.model.AmTr_v1.0_scaffold00119.25 89 GLRTNRATEAGYWKATGKDKEIYKGRKTLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 147 ************************9999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-62 | 15 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.776 | 20 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-28 | 21 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MGAIIEQVSM IRKGEEYMDL PPGFRFHPTD EELITSYLIE KVMNGSFTAR AIGEADLNKC 60 EPWDLPWKAK MGEKEWYVFC LRDRKYPTGL RTNRATEAGY WKATGKDKEI YKGRKTLVGM 120 KKTLVFYKGR APKGEKTNWV MHEYRLEGKY SYNNLSRTTT KDEWVVSRIF HKSSAGKRAP 180 FSGLLRINSF GDELRSPSLP PLMDSSVTNA SSSLMDDGIR ERVDMPSFST SLEEQNDQLM 240 SFGLNRYGGL GPGGVNPGAT SHNPAYHPHF SRFNSLYPYQ TPSGFNTMNH PRNNQAPLYL 300 HSSLDTSDRA MLRTVADGHG AKRFKVEQER GSSLLQEPPR CVVSNQSMVS ISQDTGMSTD 360 VNTEISSVVS KHEFCSRPFE DLEALSSSAG PVDLDCLWNY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-51 | 18 | 178 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-51 | 18 | 178 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-51 | 18 | 178 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-51 | 18 | 178 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-51 | 18 | 178 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-51 | 18 | 178 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-51 | 18 | 178 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-51 | 18 | 178 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-51 | 18 | 178 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-51 | 18 | 178 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-51 | 18 | 178 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-51 | 18 | 178 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-51 | 18 | 178 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-51 | 18 | 178 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006829782.3 | 0.0 | NAC domain-containing protein 100 | ||||
Refseq | XP_020517567.1 | 0.0 | NAC domain-containing protein 100 | ||||
Refseq | XP_020517568.1 | 0.0 | NAC domain-containing protein 100 | ||||
Swissprot | Q9FLJ2 | 1e-118 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | W1NNG4 | 0.0 | W1NNG4_AMBTC; Uncharacterized protein | ||||
STRING | ERM97198 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-120 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00119.25 |
Publications ? help Back to Top | |||
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