PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00119.21 | ||||||||
Common Name | AMTR_s00119p00040230, LOC18425147 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | NAC | ||||||||
Protein Properties | Length: 358aa MW: 40894 Da PI: 9.1023 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.3 | 3e-53 | 5 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat 70 lppGfrFhPtdeel+ +yL+++++++++++ ++i+evdiyk++PwdLp+k++ +e+ewyfFs+rd+ky++ evm_27.model.AmTr_v1.0_scaffold00119.21 5 LPPGFRFHPTDEELILHYLRNRAASNPCPV-SIIAEVDIYKFDPWDLPAKAAFGEREWYFFSPRDRKYPN 73 79****************************.89***************988899**************** PP NAM 71 gkrknratksgyWkatgkdkevlsk......kgel.......vglkktLvfykgrapkgektdWvmheyr 127 g+r+nra++sgyWkatg+dk+++++ + + +g+kk Lvfykgr pkg kt+W+mheyr evm_27.model.AmTr_v1.0_scaffold00119.21 74 GERPNRAAASGYWKATGTDKPIVRSssnnnnN--HnnegkaiIGVKKALVFYKGRPPKGIKTNWIMHEYR 141 ***********************996665550..05566666***************************9 PP NAM 128 l 128 l evm_27.model.AmTr_v1.0_scaffold00119.21 142 L 142 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.01E-63 | 3 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.683 | 5 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-27 | 6 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0009835 | Biological Process | fruit ripening | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MAKNLPPGFR FHPTDEELIL HYLRNRAASN PCPVSIIAEV DIYKFDPWDL PAKAAFGERE 60 WYFFSPRDRK YPNGERPNRA AASGYWKATG TDKPIVRSSS NNNNNHNNEG KAIIGVKKAL 120 VFYKGRPPKG IKTNWIMHEY RLNDPKSRPS ILKLKGSMRL DEWVLCRIYK KSYQMQEKNM 180 IEPEHQEEEP TLEDVLSSLP SITSQPSLKI PRSASFTQFL ETVDQSMLSR LIFGTTNDSS 240 EESEPTNPIN NSKNHHHSNI DISNSNNKYQ SPLETSSLAT APQPEIEQKR PYSMMANGPN 300 DGFLPSKRPN LSMNNTNFKE HLLVPQYQFH SSGAPYQLSQ QTFFNNHILL NPLLEFQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-71 | 4 | 177 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-71 | 4 | 177 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-71 | 4 | 177 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-71 | 4 | 177 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-71 | 4 | 177 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-71 | 4 | 177 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-71 | 4 | 177 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-71 | 4 | 177 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-71 | 4 | 177 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-71 | 4 | 177 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-71 | 4 | 177 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-71 | 4 | 177 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-71 | 4 | 177 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-71 | 4 | 177 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00221 | DAP | Transfer from AT1G69490 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006829778.1 | 0.0 | NAC transcription factor 29 | ||||
Swissprot | K4BNG7 | 5e-91 | NAP2_SOLLC; NAC domain-containing protein 2 | ||||
TrEMBL | W1NQU5 | 0.0 | W1NQU5_AMBTC; Uncharacterized protein | ||||
STRING | ERM97194 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 3e-87 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00119.21 |
Entrez Gene | 18425147 |
Publications ? help Back to Top | |||
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