PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00119.12 | ||||||||
Common Name | AMTR_s00119p00026870, LOC18425138 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | NAC | ||||||||
Protein Properties | Length: 315aa MW: 35682.6 Da PI: 6.9262 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.1 | 4.4e-50 | 15 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat 70 lppGfrF Ptdeelv +yL+kk+++ +l++ +i+evd+yk++Pw+Lp+k+ ++kewyfF++rd+ky++ evm_27.model.AmTr_v1.0_scaffold00119.12 15 LPPGFRFFPTDEELVLHYLCKKITHLPLPV-PIIAEVDLYKYDPWQLPEKALFGDKEWYFFTPRDRKYPN 83 79****************************.88***************888889**************** PP NAM 71 gkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+r+nra+ +gyWkatg dk + + ++ + g+kk Lvfy+g+apkg+kt+W+mheyrl evm_27.model.AmTr_v1.0_scaffold00119.12 84 GSRPNRAAGTGYWKATGADKLLRPQtssnRQCVLGIKKALVFYEGKAPKGQKTNWIMHEYRL 145 *******************998887655455569**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-62 | 10 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.991 | 15 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-26 | 16 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MAGVAGRNAT TELNLPPGFR FFPTDEELVL HYLCKKITHL PLPVPIIAEV DLYKYDPWQL 60 PEKALFGDKE WYFFTPRDRK YPNGSRPNRA AGTGYWKATG ADKLLRPQTS SNRQCVLGIK 120 KALVFYEGKA PKGQKTNWIM HEYRLANRPS TPTTNYKKGT SLRLDEWVLC RLYNKKNNYK 180 KMLEQTEEES LAETMDSLEA IDEKQLPLRD SFTNADSHIF RCDIVGESLP DMVDLSPQPA 240 FGFGGEATAR VMMKPPPPPS TGGGERGIVD WVSPFLGFDD LQYTFPPLGE ITNTNSTNND 300 YYFSAYYPKD LILI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-81 | 7 | 181 | 7 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006829769.1 | 0.0 | NAC transcription factor 32 | ||||
Swissprot | Q52QH4 | 2e-91 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | W1NQ04 | 0.0 | W1NQ04_AMBTC; Uncharacterized protein | ||||
STRING | ERM97185 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63790.1 | 8e-77 | NAC domain containing protein 102 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00119.12 |
Entrez Gene | 18425138 |