PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00119.112 | ||||||||
Common Name | AMTR_s00119p00135380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | TCP | ||||||||
Protein Properties | Length: 218aa MW: 24334.5 Da PI: 10.4424 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 103.3 | 4e-32 | 109 | 197 | 3 | 94 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssas 71 g+kd+hsk++T++g+RdR vRl a++a++f+d+qd+LG+d++sk+ +WL+++akpai+el + + + + evm_27.model.AmTr_v1.0_scaffold00119.112 109 GRKDQHSKVSTAKGPRDRCVRLAAHTAIQFYDVQDRLGYDRPSKAMDWLINKAKPAIDELKKRTHKRSA 177 89************************************************************9555553 PP TCP 72 ec.eaesssssasnsssgkaaksa 94 + +a+s++ +++ +++ +++ evm_27.model.AmTr_v1.0_scaffold00119.112 178 SLlNANSKHCNSK----PAQDSET 197 3332222222222....1111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-29 | 109 | 190 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.541 | 110 | 168 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MLSFLALWCI SAVAIEAHLW GKRPKSQPEE TTSESPPFLS TPLSQTQHHY QTPWLSPFPN 60 NAQTYGAISL GNQPQNSSEN QRQRLSFQSI GGRGEIVKVE GGHIVRAIGR KDQHSKVSTA 120 KGPRDRCVRL AAHTAIQFYD VQDRLGYDRP SKAMDWLINK AKPAIDELKK RTHKRSASLL 180 NANSKHCNSK PAQDSETPLK QLQSSIKPKS NHFFTEI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 8e-18 | 115 | 168 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 8e-18 | 115 | 168 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 172 | KKRTH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011623141.1 | 9e-85 | transcription factor PCF5, partial | ||||
TrEMBL | W1NQ88 | 1e-161 | W1NQ88_AMBTC; Uncharacterized protein | ||||
STRING | ERM97285 | 1e-162 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 3e-41 | TCP domain protein 10 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00119.112 |
Publications ? help Back to Top | |||
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