PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00115.20 | ||||||||
Common Name | AMTR_s00115p00126760, LOC18425865 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | C3H | ||||||||
Protein Properties | Length: 539aa MW: 58303.9 Da PI: 7.9577 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.5 | 3.5e-11 | 168 | 193 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++ t tCk+Gd+CkF H++ evm_27.model.AmTr_v1.0_scaffold00115.20 168 GEKDCTYYMLTRTCKFGDSCKFDHPF 193 7889********************95 PP | |||||||
2 | zf-CCCH | 33.3 | 8.3e-11 | 219 | 245 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t Ck+G rCkF+H++ evm_27.model.AmTr_v1.0_scaffold00115.20 219 PGEPDCPYFMKTQKCKFGQRCKFNHPK 245 5789*********************96 PP | |||||||
3 | zf-CCCH | 41.4 | 2.3e-13 | 274 | 298 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G++CkF+H++ evm_27.model.AmTr_v1.0_scaffold00115.20 274 EPECTFYMKTGICKFGASCKFHHPK 298 799********************96 PP | |||||||
4 | zf-CCCH | 40.6 | 4.1e-13 | 352 | 377 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+F+H+ evm_27.model.AmTr_v1.0_scaffold00115.20 352 PGEVDCPFYLKTGSCKYGATCRFNHP 377 57899********************9 PP | |||||||
5 | zf-CCCH | 37.9 | 2.9e-12 | 434 | 455 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++++++G+Ck+G+rCkF+H+ evm_27.model.AmTr_v1.0_scaffold00115.20 434 ACDYYMKFGECKFGERCKFHHP 455 7********************9 PP | |||||||
6 | zf-CCCH | 35.7 | 1.4e-11 | 486 | 511 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+f+++t tCkyG+ CkF H+p evm_27.model.AmTr_v1.0_scaffold00115.20 486 GEAVCPFYMKTATCKYGAVCKFDHPP 511 5789********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.563 | 166 | 194 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-4 | 166 | 193 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-9 | 168 | 193 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-5 | 168 | 193 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.671 | 218 | 246 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.5E-5 | 218 | 245 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-8 | 220 | 245 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.03E-6 | 223 | 248 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 224 | 244 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.347 | 271 | 299 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.8E-7 | 271 | 298 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.4E-11 | 274 | 298 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 275 | 299 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-5 | 277 | 298 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-7 | 351 | 378 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.131 | 351 | 379 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-10 | 353 | 377 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 355 | 378 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-5 | 357 | 376 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-6 | 429 | 456 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 429 | 457 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 432 | 458 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 434 | 455 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 435 | 455 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.479 | 484 | 512 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-5 | 484 | 511 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-8 | 486 | 511 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-5 | 488 | 511 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-4 | 489 | 509 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 539 aa Download sequence Send to blast |
MANQTYSSYG GSSLSSLYSS RLSTNYIADP YSSDASLLGS NRYMGTDTIT GSDPSRYSLD 60 KGSAFLNQSD SLRFSGTDTF TASRLSGASL YTQPSRVGGE TLGILPNSSV DHSVAGLKRP 120 TEALYHQNVL GTYNTIGQSD SMYSTNSLVK RPRIESASNL PVYPQRPGEK DCTYYMLTRT 180 CKFGDSCKFD HPFWVPEGGI PDWKEVPLIP VSDMLPERPG EPDCPYFMKT QKCKFGQRCK 240 FNHPKDKVEA SNVSPSVGNT DGAIITALPE RPSEPECTFY MKTGICKFGA SCKFHHPKDR 300 PVPLTGTDSV TGEQTGSVKV DGAVVGADQQ VKPFTPFTPA LLHNSKGLPI RPGEVDCPFY 360 LKTGSCKYGA TCRFNHPDWR TTTTPAAVIN PLAATLPLGV VNTPPPALSH DPWMAQTTLG 420 LGVSVYPQRP GQIACDYYMK FGECKFGERC KFHHPLDRTA PTAAVAQQVP QQVVKLTLAG 480 LPRREGEAVC PFYMKTATCK YGAVCKFDHP PPGEVAAKAV GGAATDSKIA EGEQVKDE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006830468.1 | 0.0 | zinc finger CCCH domain-containing protein 37 | ||||
Swissprot | Q941Q3 | 1e-173 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | W1NSN3 | 0.0 | W1NSN3_AMBTC; Uncharacterized protein | ||||
STRING | ERM97884 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6754 | 15 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-163 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00115.20 |
Entrez Gene | 18425865 |
Publications ? help Back to Top | |||
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