PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00115.2
Common NameAMTR_s00115p00032780, LOC18425875
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 220aa    MW: 23934.6 Da    PI: 7.7038
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00115.2genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-202069255
                                     AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                            +++GVr ++ +gr++AeIrd +     r  r++lg+f+taeeAaka++aa+++++g
  evm_27.model.AmTr_v1.0_scaffold00115.2 20 HFRGVRKRP-WGRYAAEIRDpV-----RkSRVWLGTFDTAEEAAKAYDAAAREFRG 69
                                            69*******.**********44.....55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-372083IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-222078IPR016177DNA-binding domain
PfamPF008472.1E-132069IPR001471AP2/ERF domain
CDDcd000185.91E-192077No hitNo description
PROSITE profilePS5103223.7362077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-322077IPR001471AP2/ERF domain
PRINTSPR003677.3E-112132IPR001471AP2/ERF domain
PRINTSPR003677.3E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MAPKNRGNSN HQGSSAKENH FRGVRKRPWG RYAAEIRDPV RKSRVWLGTF DTAEEAAKAY  60
DAAAREFRGS KAKTNFPPPH QHHDDGAITA GHQSPSSHSS STVESSSREA VPLLDLDSSC  120
CRPHLSTTSC FPSFQRLPCP IPVTQPLFFI RSDKMMMGSG YGGGVVEYCH GDPGTAAAQS  180
DSDSSSVVMD LHHHLSPPSS YGRMILDFDL NHPPPTEIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-221677163ATERF1
3gcc_A1e-221677163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006830450.11e-163ethylene-responsive transcription factor 4
TrEMBLW1NNZ81e-162W1NNZ8_AMBTC; Uncharacterized protein
STRINGERM978661e-162(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-25erf domain protein 9
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]