PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00114.66 | ||||||||
Common Name | AMTR_s00114p00142630, LOC18426971 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | B3 | ||||||||
Protein Properties | Length: 243aa MW: 27304.7 Da PI: 7.6306 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 99.5 | 2e-31 | 9 | 102 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWk 66 f+k ltpsdv+k++rlv+pk++ae++ + ++e++ l +ed sg+ W+++++y+++s++yvltkGW+ evm_27.model.AmTr_v1.0_scaffold00114.66 9 FDKPLTPSDVGKLNRLVIPKQHAEKYfpldQTSNEKGLLLGFEDNSGKPWRFRYSYWNSSQSYVLTKGWS 78 89***************************966677899******************************** PP HHHHHHT--TT-EEEEEE-SSSEE..E CS B3 67 eFvkangLkegDfvvFkldgrsefelv 93 +Fvk+++L++gD+v F+ r++++l+ evm_27.model.AmTr_v1.0_scaffold00114.66 79 RFVKEKQLCAGDIVSFS---RHSGKLF 102 *****************...4455555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.0E-41 | 3 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-30 | 5 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.67E-24 | 7 | 96 | No hit | No description |
SMART | SM01019 | 6.3E-22 | 9 | 108 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-27 | 9 | 103 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.128 | 9 | 109 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEEEREHMFD KPLTPSDVGK LNRLVIPKQH AEKYFPLDQT SNEKGLLLGF EDNSGKPWRF 60 RYSYWNSSQS YVLTKGWSRF VKEKQLCAGD IVSFSRHSGK LFIAFKHRAN LSPQIPLWHR 120 NLNNIHATSS INGADSIDNG GVGYNYNGVL WCSRPNGSLY YVRVPSHGGE MSSGNGVKRV 180 RLFGVDLECP EVEETDSVGV TGAWPAPQLF SNVGLVPRAP LEREREQTIS FDLEQMPGSQ 240 WG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 9e-53 | 4 | 108 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 9e-53 | 4 | 108 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006836093.1 | 0.0 | B3 domain-containing transcription factor NGA1 | ||||
Swissprot | O82799 | 1e-54 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | W1NPW3 | 1e-180 | W1NPW3_AMBTC; Uncharacterized protein | ||||
STRING | ERM98946 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP365 | 16 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 3e-53 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00114.66 |
Entrez Gene | 18426971 |