PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00113.16
Common NameAMTR_s00113p00077540
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 554aa    MW: 62134 Da    PI: 6.6906
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00113.16genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.53.9e-511532811128
                                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkk 67 
                                              +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd+++k++     +++wyfFs++dkk
  evm_27.model.AmTr_v1.0_scaffold00113.16 153 VPPGFRFHPTEEELLHYYLRKKVAYEKIDL-DVIRDVDLNKLEPWDIQEKCRIgttPQNDWYFFSHKDKK 221
                                              69****************************.9***************964443122456*********** PP

                                      NAM  68 yatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                              y+tg+r+nrat++g+Wkatg+dk +++ + + +g++ktLvfykgrap+g+k+dW+mheyrl
  evm_27.model.AmTr_v1.0_scaffold00113.16 222 YPTGTRTNRATAAGFWKATGRDKVIYA-SFKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 281
                                              ***************************.8889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-57142313IPR003441NAC domain
PROSITE profilePS5100556.182153313IPR003441NAC domain
PfamPF023656.4E-27154281IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0010047Biological Processfruit dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MSVKLNLSMG QALEPNGLGW SPTSDLIIFQ GLHVVAVVTQ ETEATIWSTP IFRCFQFSRA  60
FLNHLLGPEL CITSDYCGNG RRFATRKLAA EPHDLLSGKR FLQRIDGTSR GKGELLQYRL  120
DSEFQEQSND GDGSHRTSLV ADMSLSVNGQ YRVPPGFRFH PTEEELLHYY LRKKVAYEKI  180
DLDVIRDVDL NKLEPWDIQE KCRIGTTPQN DWYFFSHKDK KYPTGTRTNR ATAAGFWKAT  240
GRDKVIYASF KRIGMRKTLV FYKGRAPHGQ KSDWIMHEYR LDEQPDSNNS QNSNASGESS  300
QEEGWVVCRV FKKKNLHKTH DPPSLNNSGD FSNLNPSNDP ALDQILQYMG RSRTCKQENT  360
DATTSSQYNN TCFSLIPQKL MNFETPPLPP LSNDFRPPNI KRNSSSCYAP IEDQQDSDEP  420
TSGSCYSSQL SDWATLDRLV ASHLNGQEDE SKQLVSFGDP GMGIPCPTGF PFCPSSDHDL  480
SSLTPLRPDT NNGDGTQHNH IQSNHGRLFN GGQDFNSDVD LWSFARPSDS SHSRGHASLP  540
GFASTIAEVT QKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-4614931511170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00321DAPTransfer from AT2G46770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020518206.10.0NAC domain-containing protein 43 isoform X1
SwissprotQ84WP61e-114NAC43_ARATH; NAC domain-containing protein 43
TrEMBLW1NV270.0W1NV27_AMBTC; Uncharacterized protein
STRINGERM985240.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-105NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  4. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  5. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  6. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  7. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  8. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]