PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00111.88
Common NameAMTR_s00111p00113030, LOC18428270
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 336aa    MW: 36657 Da    PI: 6.8881
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00111.88genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.6e-21142192255
                                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                              +y+GVr+++ +g+++AeIrdp+++   +r++lg+f+ta eAa+a+++a+ +l+g
  evm_27.model.AmTr_v1.0_scaffold00111.88 142 HYRGVRQRP-WGKFAAEIRDPNKQ--GARVWLGTFDTAIEAARAYDQAAFRLRG 192
                                              8********.**********9544..4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.41E-32141200No hitNo description
Gene3DG3DSA:3.30.730.109.0E-33141201IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22142201IPR016177DNA-binding domain
PROSITE profilePS5103224.316142200IPR001471AP2/ERF domain
SMARTSM003808.8E-38142206IPR001471AP2/ERF domain
PfamPF008474.9E-15142192IPR001471AP2/ERF domain
PRINTSPR003671.5E-10143154IPR001471AP2/ERF domain
PRINTSPR003671.5E-10166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEAFQSSSVL DLIREHLLGD FAIDELFEAL DSNKTNLSLE IGSESTVHEE KTSGLEDMTS  60
KSRINKEKTS NLTPLITESR ETGLPPPHNS SPSISRRPSL TLALPPAQPL DLTPTGRNTR  120
PDKFSGEKSA GITGSSSDSK KHYRGVRQRP WGKFAAEIRD PNKQGARVWL GTFDTAIEAA  180
RAYDQAAFRL RGSRAILNFP LEAGRNPNGN PKGVAEEAAI TSQNPNGASK GAQIVAGEAS  240
VAGRNPNGEE RKRMREETVH NTCLKVPKME SDESIHNMCM KRSPENWLET RPESGFTAPP  300
LTPSNWWDCG ELKGIFEVPP LSPHSPFGYS QVLVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-31141201464ATERF1
3gcc_A8e-31141201464ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006837369.10.0ethylene-responsive transcription factor 5
TrEMBLW1NX510.0W1NX51_AMBTC; Uncharacterized protein
STRINGERN002230.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-43ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]