PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00111.25 | ||||||||
Common Name | AMTR_s00111p00051610, LOC18428204 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 363aa MW: 38745.8 Da PI: 4.5568 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 82 | 132 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +grWv+eIr+p++ + r++lg+f t+e+Aa+a++ a++ ++g evm_27.model.AmTr_v1.0_scaffold00111.25 82 PVYRGVRMRN-WGRWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALTIKG 132 68*****998.**********843...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.9E-13 | 82 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-36 | 83 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.538 | 83 | 140 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-21 | 83 | 141 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-31 | 83 | 141 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.19E-32 | 84 | 142 | No hit | No description |
PRINTS | PR00367 | 9.4E-10 | 84 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.4E-10 | 106 | 122 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MAPLPSSKSE LTPSSSLSSS TTTTTTTTTS SSSSASASSS PKTLEFSQNS KISTSAPTSE 60 AADSDEPSKK SRRTNADGGK HPVYRGVRMR NWGRWVSEIR EPRKKSRIWL GTFPTPEMAA 120 RAHDVAALTI KGRSAFLNFP ELAAELPRPA SASPRDIQAA AAKAASSSFP VSPSKALNSS 180 GMLASSPENS TVENTIRFEE NSTGSMENIH NAASRVAQIL DEEEAIFMGL PDIPSSPDNV 240 VISSEDIFRL SENFPGMTDS MVSTPVSAAM PLLVEEDIFG DLPNIPLSPE NSSPENAFHS 300 SENTFQQQSP AANFATVSPY LGLCDEELAF HDISSNVLFS PGWFLPSVDA GFRQEGAFLW 360 EN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 78 | 141 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006837306.1 | 0.0 | ethylene-responsive transcription factor ERF043 | ||||
TrEMBL | W1NZQ7 | 0.0 | W1NZQ7_AMBTC; Uncharacterized protein | ||||
STRING | ERN00160 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 3e-49 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00111.25 |
Entrez Gene | 18428204 |
Publications ? help Back to Top | |||
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