PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00111.114
Common NameAMTR_s00111p00135880, LOC18428296
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 320aa    MW: 34848 Da    PI: 8.5683
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00111.114genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.6e-1498142347
                                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                               +WT+eE+  ++ + ++lG+g+W+ I++   ++Rt+ q+ s+ qky
  evm_27.model.AmTr_v1.0_scaffold00111.114  98 AWTEEEHRTFLAGLEKLGKGDWRGISKNYVTTRTPTQVASHAQKY 142
                                               7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.779724IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.41291147IPR017930Myb domain
SuperFamilySSF466893.45E-1792146IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-1894146IPR006447Myb domain, plants
SMARTSM007178.5E-1195145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-1196141IPR009057Homeodomain-like
CDDcd001671.13E-998143No hitNo description
PfamPF002497.7E-1298142IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGKDSCRKCS HCGNNGHNSR TCSERERGLK LFGVRISTNG EGMRKSLSMV NLASLDGLNQ  60
EDGGSGDQGI MRKSQSMGNL INGDENGKGH ERKKKGVAWT EEEHRTFLAG LEKLGKGDWR  120
GISKNYVTTR TPTQVASHAQ KYFLRQCSLK KKKKRRSSLF DLVTLNNCGT SGTAPALSLN  180
LDDQLPNECF LSNHPNDQVE STKNQVLDKG SETNPTFSLI GNPEFTGLAY PIHSTSIGKA  240
SSSEFPQLSF EQLPEFMAES YPYRQFPATN AKFPACLSNP PVSLSSTPVI ENRELELSIA  300
PPQASTFSSP STGNVVEAH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149155KKKKKRR
2150155KKKKRR
3151155KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006837395.10.0probable transcription factor At5g61620
TrEMBLW1NY230.0W1NY23_AMBTC; Uncharacterized protein
STRINGERN002490.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.14e-44MYB_related family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]