PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00110.8
Common NameAMTR_s00110p00030150
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 428aa    MW: 46826.1 Da    PI: 7.6648
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00110.8genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.91.3e-16244291355
                                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                             + hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  evm_27.model.AmTr_v1.0_scaffold00110.8 244 TVHNQSERRRRDRINERMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 291
                                             56*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-18238297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.031241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-19244302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-14244291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.94E-10246295No hitNo description
SMARTSM003534.5E-18247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MNHCDGSWDM RRRGEEEEGR VTHQGSFGHS YLVPSISDYH VAELTWENGH LAMHGLESVR  60
PVKLKSKPLW TRTGSDMLES VVQQAAQVAQ ANEPRVSPNE PMSWLPHCAP KKAIEPQAAH  120
KGGLVQTIDR IPVNMSSVVA STSGICGNSE GSLRDREKST PGFVAEGASE GACTTVDDNG  180
SGSFGRDIET TWMTWASLES PSSTGKADCS SKCKRRSQAE KDDEVENKTD TGRSQSTKRS  240
RSATVHNQSE RRRRDRINER MKALQKLVPN ASKTDKASML DEVIEYLKQL QAQVQMINLR  300
SMPHMMMPMA MPLTQAMFGH HGGMAMPSLG MAMSVMDACA SGAHPTPLIH PATASFMPPA  360
LLATHAMPAC VSPEPSSSVP KVMQDPYSAF LAQSMNMDLY NKMAAFYQQM QQPTHVKHPA  420
HVNTKPE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249254ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006837031.30.0transcription factor UNE10 isoform X1
TrEMBLW1NYW60.0W1NYW6_AMBTC; Uncharacterized protein
STRINGERM998840.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-34bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]