PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00109.47
Common NameAMTR_s00109p00061950, LOC18426614
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 983aa    MW: 108532 Da    PI: 5.8195
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00109.47genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538.1e-175298148
                                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                             +g WT+eEde+l +av+ + g++Wk+Ia+ +   Rt+ qc +rwqk+l
  evm_27.model.AmTr_v1.0_scaffold00109.47 52 KGGWTPEEDEILRKAVHYYNGKNWKKIAAFFT-DRTDVQCLHRWQKVL 98
                                             688****************************9.************986 PP
2Myb_DNA-binding60.73.1e-19104150148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                              +g+W++eEd+ ++++v+q+G + W+tIa+ ++ gR +kqc++rw+++l
  evm_27.model.AmTr_v1.0_scaffold00109.47 104 KGPWSKEEDDMIIELVRQHGAKKWSTIAQALP-GRIGKQCRERWHNHL 150
                                              79******************************.*************97 PP
3Myb_DNA-binding537.8e-17156199146
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                              + +WT++E++ l++a++q+G++ W+  a+ ++ gRt++ +k++w++
  evm_27.model.AmTr_v1.0_scaffold00109.47 156 KEAWTQQEELALIRAHQQYGNK-WAELAKFLP-GRTDNAIKNHWNS 199
                                              579*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9654798IPR017930Myb domain
SuperFamilySSF466895.1E-1950112IPR009057Homeodomain-like
SMARTSM007172.9E-1451100IPR001005SANT/Myb domain
PfamPF002496.9E-155298IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2154110IPR009057Homeodomain-like
CDDcd001673.93E-135598No hitNo description
PROSITE profilePS5129431.99499154IPR017930Myb domain
SuperFamilySSF466891.5E-31101197IPR009057Homeodomain-like
SMARTSM007176.2E-18103152IPR001005SANT/Myb domain
PfamPF002491.4E-17104150IPR001005SANT/Myb domain
CDDcd001671.10E-15106150No hitNo description
Gene3DG3DSA:1.10.10.606.4E-26111158IPR009057Homeodomain-like
SMARTSM007173.0E-16155203IPR001005SANT/Myb domain
PROSITE profilePS5129420.589155205IPR017930Myb domain
PfamPF002495.7E-15156199IPR001005SANT/Myb domain
CDDcd001671.19E-12158201No hitNo description
Gene3DG3DSA:1.10.10.603.1E-22159205IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 983 aa     Download sequence    Send to blast
MAGDRTKRNA TIESSRNQVT APALSDGSSE TANNLRLNSH GRTSGPTRRS TKGGWTPEED  60
EILRKAVHYY NGKNWKKIAA FFTDRTDVQC LHRWQKVLNP DLVKGPWSKE EDDMIIELVR  120
QHGAKKWSTI AQALPGRIGK QCRERWHNHL NPAISKEAWT QQEELALIRA HQQYGNKWAE  180
LAKFLPGRTD NAIKNHWNSS LKKKLASYVA SGLLGQFPGF SHVDPTTLCV PSSSSTWNQP  240
TTGDESLKDA VGVDDMSECS QGSVSVGFFQ SEPCGLADTS VQAIHHASEL LNISDEANKK  300
DATEYLASPC SEDYYIPALP EAESEVPEEV DGHEDGYSVG DACGMNSIEV SKTTLLERDE  360
ELSGPLKTSN IKDSVLSQCT DYFRSPTTPQ RNISSPDKHE NEVFMVPNNG IGSKFSETRG  420
EHGGYRISDI IDLHGCMISY CGSANIGSSQ MQNPRLDKGD VCCPIAPNDE FLKPHNETEA  480
PAQIDTNMSN LVSEDNCRTH SRGIDENHRP HSEKLDSEAL FYEPPRIPSW DLPFVNCDLV  540
ACGGDLQQAY SPLGIRQQMM FSSIECSTPY RLWDSPCDTS PDAVLKSAAK SFGSTPSILK  600
KRPRDPSTPV LEMKRDNEPG RELNRGLFST PYHDKCESSC LDENGACRSS FGGEGSHMPS  660
PQYRLKKKPM ASSKLNDTHF VRDLRDEGSS LDAQLDFCNS KNEVKQVTDK MANLETSDEN  720
RTMQPSGVLS AHNVNDIQLF SPTGDECPIN RPLKGCTRTP RSHLRKHKEI TLSQVDRKGR  780
YDHAFESSCL SCFVSPSLCD RKHDPRISGQ KGIPSNKEDV ENISIFCNTP GIKRGIDSPS  840
AWKSPWYIED LDFFMSPGEK SYDAIGLMRE LSGHTAAALA EAGEILANGN RDMCSSPAKE  900
NGPINQSHIK ETTQYPDNEL LNLIPLPDSA LFCSEARVLD FSGCDTPGKA SNTKENGVGG  960
NNQWSSSINL SSPSSYLMKA CR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-65522056159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-65522056159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006833320.10.0transcription factor MYB3R-4 isoform X1
RefseqXP_020518259.10.0transcription factor MYB3R-4 isoform X1
TrEMBLW1NSE30.0W1NSE3_AMBTC; Uncharacterized protein
STRINGERM985980.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.27e-98myb domain protein 3r-4
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]