PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00108.27
Common NameAMTR_s00108p00114900
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 1130aa    MW: 122613 Da    PI: 5.5556
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00108.27genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-0883124346
                                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                              +WT+ E e + +  +++G++ +++Ia+ +  ++t  +c+++++k
  evm_27.model.AmTr_v1.0_scaffold00108.27  83 PWTAKEKEVFMEMLAMFGKD-FSKIASFLE-HKTTADCVEFYYK 124
                                              8*****************99.*********.***********99 PP
2Myb_DNA-binding29.71.5e-09311351345
                                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                               WT eE   +v av+ +G++ ++++++++g  R++ qc+ ++ 
  evm_27.model.AmTr_v1.0_scaffold00108.27 311 DWTDEEKAVFVTAVRTYGKD-FTSVSHCVG-SRSRDQCRIFFS 351
                                              7*****************99.*********.********8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.09E-1467129IPR009057Homeodomain-like
PROSITE profilePS5129316.53379130IPR017884SANT domain
SMARTSM007171.4E-880128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-682127IPR009057Homeodomain-like
PfamPF002493.1E-682125IPR001005SANT/Myb domain
PROSITE profilePS5129310.547307358IPR017884SANT domain
SMARTSM007174.4E-7308356IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-5311352IPR009057Homeodomain-like
SuperFamilySSF466892.62E-9311358IPR009057Homeodomain-like
PfamPF002496.6E-8311350IPR001005SANT/Myb domain
CDDcd001671.52E-6312350No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1130 aa     Download sequence    Send to blast
MFSLKFTSGG ISAGNLTLVP TSEVVDFTSR LLSDFLIKKY RNNLKMPALF MDEKEKRYSR  60
FVSWNGLVED PIAVEKERAT INPWTAKEKE VFMEMLAMFG KDFSKIASFL EHKTTADCVE  120
FYYKNQKSES FEKIKKRLEL KKQDRSFLTN TYLVTSGKKW HNEANAASLD VLGAASIVAA  180
CADDGKNTSS SSRHKHLGRS IMGSYYSSSK ILRPDDKLLE RSGDVGAVSK NERESPATDL  240
LAGICCALSS EAMRSCITNS VTPGGHERRF PLRTAERPLT PVTTTADLIV QNSIEEEVED  300
TCSEDSCIEL DWTDEEKAVF VTAVRTYGKD FTSVSHCVGS RSRDQCRIFF SKARKCLGLD  360
VICPVGLGNE GSDADEEEEE GHSSDTDGVT TCAVEMDSAL GSARSCSKMD MDMDLEPTLP  420
RLKTLYEATS VSEMGQSEHD AEEVVEKQNT VLDKSQVESV FADQDEGLVI KGDEEQLNVS  480
LANEQKNEEV GFSHSAPQQH SEDEDLGGRS VDDEAEWRET DHEEEACDSD AQLGAGVGYK  540
ESSCMMSSPS GSNGGVDLKQ KIDFDGCKPS GLKTDDSPLR QSSPSMSYMV SAMPPVEQPV  600
GDMKKCVSSC GDVADMQTCS GSISGWHCSN VLHDTETTAP FGSGPVSGHH VLDDGIFKVG  660
VTSLPHLKQP KTQIISWQQE NFSLSGFSGG NAISVAKDHN RAPTQNSNCQ GLPATSGNGA  720
GSKQQHRQQQ DASDRVQQQP VVAGMGSLDF YKQHQQRSPS YHQQLDSPSM HMILRGHPLL  780
QVTSNGDIAS SMVALDSKKP KQLILRCDQP SLQSVRKENG SSISLSFTDR TVTQLPNPQQ  840
QQQYHKRQSN GSSSDTLFLR PNREVPSCGS QHLLTCPPKV AGKQAHSSGE SGEDLVRSGD  900
LKLFGKNILV PSQQSSSPES AGSKSAESLV PRAHENGIGL SHFNSSTKHN SSCGFSGMVE  960
SSSSRLGGAK VPPPSPPESG ISMLSSKYLV ALDDQQQPPI FTSAMVVNRN DSSGRGGGLV  1020
SKKELNAAAE FHHQLYKGGY DSVAMQPFTI LSELQKRSSG VFQGSMANKK RGMSMNMNVG  1080
QGLVGGVGDN TVVSDPVAAM KMHFADQFVG VQAGFIGREE EVWRGDKTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C1e-1746132994NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D1e-1746132994NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020518724.10.0uncharacterized protein LOC18427375 isoform X2
TrEMBLW1NUR80.0W1NUR8_AMBTC; Uncharacterized protein
STRINGERM993420.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP32151725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.12e-71MYB family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]