PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00107.26 | ||||||||
Common Name | AMTR_s00107p00095070, LOC18428348 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 294aa MW: 32361.3 Da PI: 6.1032 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.1e-19 | 138 | 188 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr p r r++lg+f taeeAa+a+++a+ kl+ge evm_27.model.AmTr_v1.0_scaffold00107.26 138 VYRGVRQRQ-WGKWVAEIRLPQ----RrMRVWLGTFLTAEEAARAYDRAAYKLRGE 188 7*****999.**********93....35**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.0E-12 | 138 | 188 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-34 | 138 | 201 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.617 | 138 | 195 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-31 | 138 | 196 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-22 | 138 | 197 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.63E-19 | 139 | 197 | No hit | No description |
PRINTS | PR00367 | 9.2E-11 | 139 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-11 | 161 | 177 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MTGSLEANAL SLFQFPRGDD WNPAITLSDI LLRGGGQTAL DSVLADNGGF SSADGLMPLG 60 SSIYFCQRDW LKQPERESIN QLLPHNYPSF CANISTNSNS TSGCICPGIS TSSLYQRRSP 120 SSENSVRVSS PSCKTRKVYR GVRQRQWGKW VAEIRLPQRR MRVWLGTFLT AEEAARAYDR 180 AAYKLRGEYA KLNFPMSREK GGRGMREVEA AVDAKLQAVW RRVGKGRGEE KERGVTGDDE 240 LGCRESGMGS GDGLSEEGYG CSSSPWEGDM EDDCFLAKMP SLEQELIWEV LAA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-19 | 137 | 201 | 4 | 69 | ATERF1 |
3gcc_A | 8e-19 | 137 | 201 | 4 | 69 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006837446.1 | 0.0 | ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | W1P027 | 0.0 | W1P027_AMBTC; Uncharacterized protein | ||||
STRING | ERN00300 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 9e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00107.26 |
Entrez Gene | 18428348 |
Publications ? help Back to Top | |||
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