PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00106.58
Common NameAMTR_s00106p00088880, LOC18428780
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 371aa    MW: 40034.7 Da    PI: 8.4809
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00106.58genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017628123
                                             EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                             ++C++C+k+F +   L  H+r+H
  evm_27.model.AmTr_v1.0_scaffold00106.58  6 HTCKHCSKTFATFTALGGHMRSH 28
                                             79********************9 PP
2zf-C2H210.70.0016293315123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                              ++Cp+C ++F +   L  H r+H
  evm_27.model.AmTr_v1.0_scaffold00106.58 293 HQCPYCYRVFGSGQALGGHKRSH 315
                                              79**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.29E-9528No hitNo description
Gene3DG3DSA:3.30.160.606.0E-4529IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.866633IPR007087Zinc finger, C2H2
PfamPF139122.0E-9629IPR007087Zinc finger, C2H2
SMARTSM003550.0088628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-9156183No hitNo description
PROSITE profilePS501579.452161188IPR007087Zinc finger, C2H2
PfamPF139125.9E-10161185IPR007087Zinc finger, C2H2
SMARTSM003550.26161183IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280163183IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182293320IPR007087Zinc finger, C2H2
PfamPF139128.4E-12293315IPR007087Zinc finger, C2H2
SMARTSM003550.23293315IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280295315IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDPTPHTCKH CSKTFATFTA LGGHMRSHST TSTITTTTNT NPNPLPLSYS LRNNPKKTRP  60
FVLYDSQTFT PRRNSHPPKN SGRKSGQIPC NSGDTDTEIS SSISDAASVE ENVAVSLMLL  120
SRGMYDNPNS PKNRFSGEFS GVVLPDSGVC ESSEPSKKSK FECSACKKIF KSYQALGGHR  180
ARHMRIKGIS ATSMENGELL GCLNNQEIEE GKIESSATTM ENGEFWGFSN KGESSKEIKK  240
IEGSPATTME SGAILGTPNN QKAQGNRRKI DSLSATAMEN GRISGFPNKT KIHQCPYCYR  300
VFGSGQALGG HKRSHGASAK LGLKPPSEAE SVLDLNKPAP VNEVEGDAIS RIEVMGEEDE  360
VGSSSFWRDQ *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006838141.10.0zinc finger protein ZAT1
TrEMBLW1P1990.0W1P199_AMBTC; Uncharacterized protein
STRINGERN007100.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-12C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]