PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00106.41
Common NameAMTR_s00106p00065610, LOC18428762
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 273aa    MW: 29763.6 Da    PI: 9.1666
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00106.41genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74.2e-11447344
                                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
                          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                              W+ eE++ + ++ +++  +   +W++Ia+t++ g+t +++k ++
  evm_27.model.AmTr_v1.0_scaffold00106.41  4 GWSREEEKTFERGLAEYSEDtihRWEKIAQTLP-GKTVEEVKKHY 47
                                             6********************************.**********9 PP

2Myb_DNA-binding40.65.8e-13121165347
                                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                              +WT+eE+ l++ +  ++G+g+W++I+r    +Rt+ q+ s+ qky
  evm_27.model.AmTr_v1.0_scaffold00106.41 121 PWTEEEHRLFLLGLDKFGKGDWRSISRNYVITRTPTQVASHAQKY 165
                                              8*****************************89************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.5E-8153IPR001005SANT/Myb domain
PROSITE profilePS5129313.003155IPR017884SANT domain
PfamPF002491.6E-8347IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-7348IPR009057Homeodomain-like
SuperFamilySSF466891.24E-11458IPR009057Homeodomain-like
CDDcd001671.81E-9547No hitNo description
PROSITE profilePS5129418.625114170IPR017930Myb domain
SuperFamilySSF466893.31E-17115171IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-17117168IPR006447Myb domain, plants
SMARTSM007171.6E-11118168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-11118164IPR009057Homeodomain-like
CDDcd001674.70E-10121166No hitNo description
PfamPF002491.1E-11121165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVGGWSREEE KTFERGLAEY SEDTIHRWEK IAQTLPGKTV EEVKKHYDLL IEDVNSIESG  60
KVPIPCYASD DFTELRAFEN GGVAKKGALS GGSLYSNFMG ETNGLPKGAS KAEQERKKGT  120
PWTEEEHRLF LLGLDKFGKG DWRSISRNYV ITRTPTQVAS HAQKYFIRLN SMNRDRRRSS  180
IHDITSVNTS GVSSPHGPIT GQSGSSIGTT NKHPLHNSGV VRGGASMMGG HYPHIVPAAV  240
GTPVIIPPPP GYGAPPYIVP VAYPVPPNMM HQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-195691175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006838124.10.0transcription factor SRM1
SwissprotQ9FNN66e-86SRM1_ARATH; Transcription factor SRM1
TrEMBLW1NYI20.0W1NYI2_AMBTC; Uncharacterized protein
STRINGERN006930.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.17e-73MYB family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]